プロフィール詳細

プロジェクトを作成

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Dr. ABHIGNA N.に依頼

India

Computational Drug Discovery & Bioinformatics Expert | Molecular Docking | NGS | Aptamer Design | Pipeline Development

プロフィール概要

I am a Bioinformatics Scientist with 6+ years of experience in computational biology, structural bioinformatics, and data-driven drug discovery. I help researchers, biotech companies, and academic groups transform complex biological data into meaningful insights, reproducible workflows, and publication-ready results. My expertise spans the full spectrum of computational research — from raw sequencing data to structure-based modeling and therapeutic target identification. Key expertise: • Molecular docking, virtual screening, and protein–RNA interaction analysis • Molecular dynamics simulations (GROMACS, Desmond) • NGS data analysis (SELEX-NGS, FASTQ processing, sequence enrichment) • Aptamer design, motif discovery, and secondary structure analysis • Multi-omics data integration (genomics, transcriptomics) • Microbiome data analysis and disease association studies • Python-based bioinformatics pipelines (automation, reproducibility, scalability) I have worked on diverse projects including: ✔ Aptamer discovery using SELEX-NGS data ✔ Computational targeting of microbial genes (cutC/cutD) for therapeutic applications ✔ Structure-based drug discovery workflows ✔ Microbiome-based disease prediction and target identification I bring strong experience in translating computational results into biologically meaningful interpretations and clear scientific reports. I am comfortable collaborating with interdisciplinary teams and supporting projects from concept to publication. Services I offer: • End-to-end bioinformatics analysis • Molecular docking and simulation studies • NGS and sequencing data analysis • Pipeline development and automation (Python) • Scientific consulting and report writing • Training and project guidance for students and researchers I can handle projects from raw data to publication-ready results. Let’s work together to accelerate your research.

専門分野

• ★ Next Generation Sequencing (NGS)
• ★ Bioinformatics
• ★ Gene & Protein Expression Analysis
• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Microbiological Assays
• ☆ Biochemistry
• ☆ Molecular Biology
• ☆ Protein Sequencing
• ☆ RNA Sequencing
• ☆ Systems Biology
• ☆ Structural Bioinformatics
• ☆ Biosensors

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, General Proofreading & Editing

Research User Research, Meta-Research, Feasibility Study, Fact Checking, Gap Analysis, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Digital Strategy Consulting, Healthcare Consulting, Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Product Evaluation, Product Validation, Quality Assurance & Control (QA/QC), Concept Development

職務経験

Editoral reviewer

CACTUS Communications

7月 2026 - 現在

Bioinformatics Analyst

Self Employed

1月 2026 - 現在

CSIR-SRF

JSS Academy of Higher Education and Research

2022 - 2026

Junior Researcher

CSIR-CFTRI

1月 2020 - 2月 2022

学歴

PhD -Bioinformatics

JSS AHER , Mysore

4月 2022 - 1月 2026

MSc - Bioinformatics

JSS Academy of Higher Education and Research

6月 2016 - 10月 2018

BSc - Biochemistry, Microbiology, Biotechnology

Yuvaraja's College Mysore

6月 2013 - 6月 2016

認定資格

• NET

  CSIR

  1月 2020 - 現在

• KSET

  University of Mysore

  12月 2019 - 現在

• Senior Research Fellowship

  CSIR

  1月 2022 - 1月 2025

• junior research fellowship

  CSIR

  1月 2020 - 1月 2022

出版物

JOURNAL ARTICLE

Nagaraj, A., Sahana, K.S., Kavana, C.P., Harendra, B., Dharmashekara, C., Anil Kumar, K.M., Kollur, S.P., Shreevatsa, B., Shivamallu, C.(2026). Gut-Derived TMAO as a Biomarker for Atherosclerosis and Cardiovascular Disease: A Systematic Review and Meta-Analysis . International Journal of Drug Delivery Technology. 16. (9). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 677-685.

Bhargav Shreevatsa, Abhigna Nagaraj, Chandan Dharmashekar, Anisha Jain, Bhavana Harendra, Siddesh V. Siddalingegowda, Haneen A. Al-Mazroua, Sheikh F. Ahmad, Shashanka K. Prasad, Chandrashekar Srinivasa, et al. (2025). Exploring precision therapeutics: computational design of antisense oligonucleotides targeting AXL gene transcripts in multiple sclerosis treatment management . Frontiers in Chemistry.

Shreevatsa, B., Nagaraj, A., Dharmashekar, C., Jain, A., Harendra, B., Siddalingegowda, S.V., Al-Mazroua, H.A., Ahmad, S.F., Prasad, S.K., Srinivasa, C., et al.(2025). Exploring precision therapeutics: computational design of antisense oligonucleotides targeting AXL gene transcripts in multiple sclerosis treatment management . Frontiers in Chemistry. 13.

OTHER

Siddalingegowda, S.V., Nagaraj, A., Shreevatsa, B., Jain, A., Dharmashekara, C., Prasad, A., Kollur, S.P., Shivamallu, C.(2025). Computational Engineering of siRNA Molecules to Silence SphK1 mRNA for Therapeutic Intervention in Triple-Negative Breast Cancer . Research Square.