プロフィール詳細

プロジェクトを作成

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Dr. Abhinav Kumar C.に依頼

Canada

Bioinformatician & Data Scientist | 6+ years in ML pipelines, including multi-omics and clinical data research

プロフィール概要

I'm a bioinformatician and biostatistician with a PhD in Experimental Medicine (UBC) and six years of building and validating computational pipelines for genomics and multi-omics research. My core strength is taking raw sequencing or multi-omics data and turning it into presentable results. I've built variant-calling pipelines (FASTA to BAM to VCF) that genotyped 700+ neonates and validated the models in an independent international cohort, and processed 1,300+ raw FASTQ files through QC and transcript quantification for a long-COVID biobank study. I work across R, Python, and Bash on HPC (Slurm) and AWS, and I'm comfortable with the full stack from pipeline engineering to statistical modelling (mixOmics/DIABLO, penalized regression, differential expression) to the figures and summaries that make results usable for non-technical stakeholders. My work includes high-dimensional molecular data (genomics, transcriptomics, proteomics (including Olink panels), metabolomics, epigenetics) and clinical data (vaccine response, sickle-cell trait, Acute Rheumatic Fever, Heart and Lung Transplant Rejection, COVID & long-COVID outcomes) I'm a good fit if you need a pipeline built from scratch, an existing one debugged or validated, a dataset taken from raw files to analysis-ready output, or multi-omics data integrated into a single model. I'm upfront if something's outside my depth rather than overpromising, and I document work well enough that your team can pick it up after I'm done.

専門分野

• ★ Omics
• ★ Bioinformatics
• ★ R
• ☆ Molecular Biology
• ☆ Statistics

サービス

• Data & AI

Data & AI Statistical Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

職務経験

University of British Columbia

- 現在

学歴

PhD in Experimental Medicine

University of British Columbia

1月 2020 - 12月 2024

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Abhinav K. Checkervarty, Casey P. Shannon, Travis M. Blimkie, Bhavjinder K. Dhillon, Reza Falsafi, Asimenia Angelidou, Joann Diray-Arce, Tue B. Bennike, Natasha M. Archer, Olubukola T. Idoko, et al. (2026). Newborns with sickle cell trait have distinct peripheral blood molecular signatures across the first week of life . Blood Red Cells & Iron.

Abhinav Kumar Checkervarty, Byron Brook, Soumik Barman, Cali Sweitzer, Anna-Nicole Bosco, Amy C. Sherman, Lindsey R. Baden, Elena Morrocchi, Guzman Sanchez-Schmitz, Paolo Palma, et al. (2024). The BNT162b2 mRNA vaccine demonstrates reduced age-associated TH1 support in vitro and in vivo . iScience.

PREPRINT

Byron Brook, Benoit Fatou, Abhinav Checkervarty, Soumik Barman, Cali Sweitzer, Anna-Nicole Bosco, Amy Sherman, Lindsey (R) Baden, Elena Morrocchi, Guzman Sanchez-Schmitz, et al. (2022). The mRNA vaccine BNT162b2 demonstrates impaired TH1 immunogenicity in human elders in vitro and aged mice in vivo .