プロフィール詳細

プロジェクトを作成

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Dr. Aisha A.に依頼

United States

NGS expert | 9 years of experience in bioinformatics, analysis pipelines and Python programming

プロフィール概要

I have an undergraduate degree in diagnostics, a master's in bioinformatics, and a Ph.D. in Molecular Biology. My postdoctoral project is focusing on characterizing HIV integration sites using ATAC-Seq, RNA-Seq and CHIP-Seq. During my Ph.D, I used error-corrected sequencing to validate in vitro and in silico CRISPR/Cas9 off-target prediction assays in genetically modified rhesus macaque models. Prior to my Ph.D. I worked as a bioinformatician where I built a reference viral database to facilitate endogenous retrovirus detection in cell lines, tissue, and vaccines.

専門分野

• ★ Next Generation Sequencing (NGS)
• ★ Python
• ☆ Molecular Biology
• ☆ Genetics
• ☆ ATAC-Seq
• ☆ DNA Sequencing
• ☆ RNA Sequencing
• ☆ Gene Editing/CRISPR
• ☆ Gene Therapy

サービス

• Consulting
• Data & AI

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

職務経験

Postdoctoral Researcher

National Institute of Allergy and Infectious Diseases (NIAID) - NIH

10月 2020 - 現在

Predoctoral Researcher

National Institute of Heart Lung & Blood (NHLBI)

8月 2016 - 8月 2020

BIoinformatician

The Food and Drug Administration (FDA)

6月 2013 - 5月 2015

Internship

The Protein Information Resource (PIR)

8月 2012 - 6月 2013

学歴

Doctorate

Georgetown University

8月 2015 - 8月 2020

Masters of Science

Georgetown University

8月 2011 - 12月 2012

認定資格

• Excellence in Research Award

  American Society of Gene and Cell Therapy

  5月 2020 - 現在

出版物

JOURNAL ARTICLE

Nickolls, A.R., Lee, M.M., Espinoza, D.F., Szczot, M., Lam, R.M., Wang, Q., Beers, J., Zou, J., Nguyen, M.Q., Solinski, H.J., et al.(2020). Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells . Cell Reports. 30. (3). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 932-946.e7.

Shin, T.-H., Baek, E.J., Corat, M.A.F., Chen, S., Metais, J.-Y., AlJanahi, A.A., Zhou, Y., Donahue, R.E., Yu, K.-R., Dunbar, C.E.(2019). CRISPR/Cas9 PIG-A gene editing in nonhuman primate model demonstrates no intrinsic clonal expansion of PNH HSPCs . Blood. 133. (23). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2542-2545.

Goodacre, N., Aljanahi, A., Nandakumar, S., Mikailov, M., Khan, A.S.(2018). A reference viral database (RVDB) to enhance bioinformatics analysis of high-throughput sequencing for novel virus detection . mSphere. 3. (2).

AlJanahi, A.A., Danielsen, M., Dunbar, C.E.(2018). An Introduction to the Analysis of Single-Cell RNA-Sequencing Data . Molecular Therapy - Methods and Clinical Development. 10. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 189-196.

Kim, M.Y., Yu, K.-R., Kenderian, S.S., Ruella, M., Chen, S., Shin, T.-H., Aljanahi, A.A., Schreeder, D., Klichinsky, M., Shestova, O., et al.(2018). Genetic Inactivation of CD33 in Hematopoietic Stem Cells to Enable CAR T Cell Immunotherapy for Acute Myeloid Leukemia . Cell. 173. (6). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1439-1453.e19.

Khan, A.S., Ng, S.H.S., Vandeputte, O., Aljanahi, A., Deyati, A., Cassart, J.-P., Charlebois, R.L., Taliaferro, L.P.(2017). A multicenter study to evaluate the performance of high-throughput sequencing for virus detection . mSphere. 2. (5).

Hong, S.G., Yada, R.C., Choi, K., Carpentier, A., Liang, T.J., Merling, R.K., Sweeney, C.L., Malech, H.L., Jung, M., Corat, M.A.F., et al.(2017). Rhesus iPSC Safe Harbor Gene-Editing Platform for Stable Expression of Transgenes in Differentiated Cells of All Germ Layers . Molecular Therapy. 25. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 44-53.

Natale, D.A., Arighi, C.N., Blake, J.A., Bult, C.J., Christie, K.R., Cowart, J., D'Eustachio, P., Diehl, A.D., Drabkin, H.J., Helfer, O., et al.(2014). Protein Ontology: A controlled structured network of protein entities . Nucleic Acids Research. 42. (D1).