プロフィール詳細

プロジェクトを作成

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Alexander H.に依頼

United Kingdom

Comparative Genomics & TE Annotation Expert

プロフィール概要

I am a computational genomics consultant specialising in transposable element annotation, genome assembly analysis, and large-scale comparative genomics. My expertise includes building and optimising TE annotation pipelines (EDTA, custom workflows), structural repeat analysis, genome-wide feature extraction, phylogenetic analysis, and high-throughput sequence data processing in Linux environments. I work extensively in Python, R, and bash-based bioinformatics workflows. I have experience handling large genome datasets across multiple species, designing reproducible computational pipelines, and delivering publication-ready analyses for academic and biotech clients. Typical projects include: - Transposable element annotation and classification - Comparative genome analysis across multiple assemblies - Custom bioinformatics pipeline development - Genome feature quantification and statistical modelling I focus on delivering clean, reproducible results with clear documentation and rapid turnaround. Available for short-term contracts and longer collaborative engagements.

専門分野

• ★ Data Analysis
• ★ Bioinformatics
• ☆ Computational Biology
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ Data Processing
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Phylogenetics
• ☆ Python
• ☆ R

サービス

• Research
• Data & AI

Research Scientific and Technical Research

Data & AI Statistical Analysis, Data Visualization, Big Data Analytics, Data Cleaning, Data Processing

職務経験

Co-Founder & Computational Genomics Lead

ViroDyn Ltd

2月 2025 - 現在

学歴

MSci Genetics

University of Sussex

9月 2022 - 現在

認定資格

• 認定資格の詳細は未入力です。

出版物

DATA SET

Alex Alexander Humphries(2026). Pan-Plant EDTA Annotation Dataset v1.0 (137 DTol Plant Assemblies; Intact TE Calls) . Zenodo

PREPRINT

Alexander Humphries(2026). Canonical NOD2 Variant Stratification in Crohn's Disease: A Reproducible Evidence Synthesis for Ileal Phenotype Architecture . Zenodo

Alexander Humphries(2025). A five-node causal circuit for ileal Crohn's disease . Zenodo