プロフィール詳細

プロジェクトを作成

★★★★★

☆☆☆☆☆

★★★★★

☆☆☆☆☆

Dr. Alexey V.に依頼

France

Scientific Writer | Data Analyst | Microbiome Researcher

プロフィール概要

As a scientific writer/editor, I develop customer-centric technical and marketing content, including white papers, applications notes, and web pages that drive lead generation, customer engagement, and promotional campaigns. I am a classically trained microbial ecologist and microbiome researcher with extensive computational experience. I have more than 12 years of research and project management experience conducted across countries in three languages. I have managed multidisciplinary collaborative projects at the interface of microbiology, synthetic biology, and computational biology by combining my background as a bench researcher and a data analyst. An avid science communicator, I co-founded a scientific online platform prettylightscience.com. I use scientific writing and data analysis/visualization techniques to present complex scientific ideas to both specialists and the general public.

専門分野

• ★ Next Generation Sequencing (NGS)
• ★ Technical & Scientific Writing
• ★ Science Communication
• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Industrial Microbiology
• ☆ Microbiological Assays
• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ DNA Sequencing
• ☆ Protein Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Data Analysis
• ☆ Data Exploration
• ☆ Data Visualization
• ☆ Ecology
• ☆ Microbial Ecology
• ☆ Food Microbiology
• ☆ Phylogenetics
• ☆ R
• ☆ Manuscript & Journal Article Writing
• ☆ Instructional Materials
• ☆ Release Notes
• ☆ Experimental Protocols
• ☆ SOP & Protocol Writing
• ☆ White Papers
• ☆ Spec Sheets
• ☆ Case Studies
• ☆ Textbook Content Writing
• ☆ Copywriting
• ☆ Emails & Newsletters
• ☆ Product Descriptions
• ☆ User Guides & Handbooks

サービス

• Writing

Writing Technical Writing, Copywriting, Creative Writing, General Proofreading & Editing, Translation

職務経験

Scientific writer

Integrated DNA Technologies

8月 2022 - 現在

Computational Biologist

Institut Curie / Institut Pasteur

11月 2019 - 7月 2022

CEA Genoscope

Research Engineer - Multi-OMICs Scientist

10月 2017 - 10月 2019

学歴

PhD Microbiology and Immunology

MSU

9月 2006 - 11月 2009

認定資格

• Writing in the Sciences

  Stanford

  1月 2023 - 現在

出版物

JOURNAL ARTICLE

Dittami, Simon M, Arboleda, Enrique, Auguet, Jean-Christophe, Bigalke, Arite, Briand, Enora, Cárdenas, Paco, Cardini, Ulisse, Decelle, Johan, Engelen, Aschwin H, Eveillard, Damien, et al.(2021). A community perspective on the concept of marine holobionts: current status, challenges, and future directions. PeerJ. 9. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e10911. PeerJ Inc.

Martineac, Rachel P, Vorobev, Alexey V, Moran, Mary Ann, Medeiros, Patricia M(2021). Assessing the contribution of seasonality, tides, and microbial processing to dissolved organic matter composition variability in a Southeastern US Estuary. Frontiers in Marine Science. 8. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 781580. Frontiers Media SA

Vorobev, Alexey, Damashek, Julian, Okotie-Oyekan, Aimee Oyinlade, Gifford, Scott Michael, Moran, Mary Ann, Hollibaugh, James Timothy(2021). Transcriptional activity differentiates families of Marine Group II Euryarchaeota in the coastal ocean. ISME Communications. 1. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 5. Nature Publishing Group UK London

Vorobev, Alexey, Dupouy, Marion, Carradec, Quentin, Delmont, Tom O, Annamalé, Anita, Wincker, Patrick, Pelletier, Eric(2020). Transcriptome reconstruction and functional analysis of eukaryotic marine plankton communities via high-throughput metagenomics and metatranscriptomics. Genome research. 30. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 647--659. Cold Spring Harbor Lab

Vorobev, Alexey, Landa, Marine, Burns, Andrew S, Durham, Bryndan P, Esson, Kaitlin, Nowinski, Brent, Sharma, Shalabh, Nielsen, Torben, Kiene, Ronald P, Moran, Mary Ann(2019). Sulfur metabolites that facilitate oceanic phytoplankton--bacteria carbon flux. The ISME journal. 13. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2536--2550. Nature Publishing Group UK London

Vorobev, Alexey, Sharma, Shalabh, Yu, Mengyun, Lee, Juhyung, Washington, Benjamin J, Whitman, William B, Ballantyne IV, Ford, Medeiros, Patricia M, Moran, Mary Ann(2018). Identifying labile DOM components in a coastal ocean through depleted bacterial transcripts and chemical signals. Environmental microbiology. 20. (8). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3012--3030. John Wiley \& Sons, Inc. Hoboken, USA

Vorobev, Alexey, Haque, Muhammad Farhan Ul, Kalidass, Bhagyalakshmi, Baral, Bipin S, DiSpirito, Alan A, Semrau, Jeremy D(2015). Methanobactin from Methylocystis sp. Strain SB2 Affects Gene Expression and Methane Monooxygenase Activity in Methylosinus trichosporium OB3b. Applied and Environmental Microbiology. 81. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2466--2473. American Society for Microbiology

Vorobev, Alexey, Farhan Ul-Haque, Muhammad, Kalidass, Bhagyalakshmi, Baral, Bipin S, DiSpirito, Alan A, Semrau, Jeremy D(2015). Methanobactin from Methylocystis sp. strain SB2 affects gene expression and methane monooxygenase activity in Methylosinus trichosporium OB3b. Applied and environmental microbiology. 81. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2466--2473. American Society for Microbiology

Dedysh, Svetlana N, Naumoff, Daniil G, Vorobev, Alexey V, Kyrpides, Nikos, Woyke, Tanja, Shapiro, Nicole, Crombie, Andrew T, Murrell, J Colin, Kalyuzhnaya, Marina G, Smirnova, Angela V, et al.(2015). Draft genome sequence of Methyloferula stellata AR4, an obligate methanotroph possessing only a soluble methane monooxygenase. Genome announcements. 3. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 10--1128. American Society for Microbiology 1752 N St., NW, Washington, DC

Vorobev, Alexey, Beck, David AC, McTaggart, Tami L, Setboonsarng, Usanisa, Goodwin, Lynne, Shapiro, Nicole, Woyke, Tanja, Kalyuzhnaya, Marina G, Lidstrom, Mary E, Chistoserdova, Ludmila(2015). Multiphyletic origins of methylotrophy in A lphaproteobacteria, exemplified by comparative genomics of L ake W ashington isolates. Environmental microbiology. 17. (3). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 547--554.

Vorobev, Alexey, Jagadevan, Sheeja, Jain, Sunit, Anantharaman, Karthik, Dick, Gregory J, Vuilleumier, Stéphane, Semrau, Jeremy D(2014). Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol. Applied and environmental microbiology. 80. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3044--3052. American Society for Microbiology

Vorobev, Alexey, Beck, David AC, McTaggart, Tami L, Setboonsarng, Usanisa, Kalyuzhnaya, Marina G, Ivanova, Natalia, Goodwin, Lynne, Woyke, Tanja, Lidstrom, Mary E, Chistoserdova, Ludmila(2014). The expanded diversity of Methylophilaceae from Lake Washington through cultivation and genomic sequencing of novel ecotypes. PLoS One. 9. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e102458. Public Library of Science

Beck, DAC, McTaggart, TL, Setboonsarng, U, Vorobev, A, Kalyuzhnaya, MG, others(2014). The Expanded Diversity of Methylophilaceae from Lake Washington.

Vorobev, Alexey, Jagadevan, Sheeja, Jain, Sunit, Anantharaman, Karthik, Dick, Gregory J, Vuilleumier, Stéphane, Semrau, Jeremy D(2014). How do facultative methanotrophs utilize multi-carbon compounds for growth? Genomic and transcriptomic analysis of methylocystis strain SB2 grown on methane and on ethanol. Applied and Environmental Microbiology. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString AEM--00218. American Society for Microbiology

Vorobev, Alexey, Beck, David AC, Kalyuzhnaya, Marina G, Lidstrom, Mary E, Chistoserdova, Ludmila(2013). Comparative transcriptomics in three Methylophilaceae species uncover different strategies for environmental adaptation. PeerJ. 1. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e115. PeerJ Inc.

Vorobev, Alexey, Semrau, Jeremy D, Jagadevan, Sheeja, DiSpirito, Alan A, Khalifa, Ashraf, Scanlan, Julie, Bergman, Brandt H, Freemeier, Brittani C, Baral, Bipin S, Bandow, Nathan L, et al.(2013). Methanobactin and MmoD work in concert to act as the ‘copper-switch’in methanotrophs. Environmental microbiology. 15. (11). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3077--3086.

Vorobev, Alexey, Jagadevan, Sheeja, Baral, Bipin S, DiSpirito, Alan A, Freemeier, Brittani C, Bergman, Brandt H, Bandow, Nathan L, Semrau, Jeremy D(2013). Detoxification of mercury by methanobactin from Methylosinus trichosporium OB3b. Applied and environmental microbiology. 79. (19). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 5918--5926. American Society for Microbiology

Vorobev, Alexey, Kalyuzhnaya, Marina G, Beck, David AC, Smalley, Nicole, Kunkel, Dennis D, Lidstrom, Mary E, Chistoserdova, Ludmila(2012). Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera. International journal of systematic and evolutionary microbiology. 62. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 106--111. Society for General Microbiology

Vorobev, Alexey, Kalyuzhnaya, Marina G, Beck, David AC, Smalley, Nicole, Kunkel, D, Lidstrom, Mary E, Chistoserdova, Ludmila(2012). Novel methylotrophic isolates from Lake Washington sediment and description of a new species in the genus Methylotenera, Methylotenera versatilis sp. nov. International Journal of Systematic and Evolutionary Microbiology. 62. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 106--111.

Vorobev, Alexey, Beck, David AC, Hendrickson, Erik L, Wang, Tiansong, Lim, Sujung, Kalyuzhnaya, Marina G, Lidstrom, Mary E, Hackett, Murray, Chistoserdova, Ludmila(2011). An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis. Journal of bacteriology. 193. (18). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 4758--4765. American Society for Microbiology 1752 N St., NW, Washington, DC

Vorobev, Alexey V, Baani, Mohamed, Doronina, Nina V, Brady, Allyson L, Liesack, Werner, Dunfield, Peter F, Dedysh, Svetlana N(2011). Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase. International Journal of Systematic and Evolutionary Microbiology. 61. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2456--2463. Society for General Microbiology

Dunfield, Peter F, Belova, Svetlana E, Vorob'ev, Alexey V, Cornish, Sabrina L, Dedysh, Svetlana N(2010). Methylocapsa aurea sp. nov., a facultative methanotroph possessing a particulate methane monooxygenase, and emended description of the genus Methylocapsa. International journal of systematic and evolutionary microbiology. 60. (11). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2659--2664. Society for General Microbiology

Vorob'ev, Alexey V, de Boer, Wietse, Folman, Larissa B, Bodelier, Paul LE, Doronina, Nina V, Suzina, Natalia E, Trotsenko, Yuri A, Dedysh, Svetlana N(2009). Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene. International journal of systematic and evolutionary microbiology. 59. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2538--2545. Society for General Microbiology

Vorob’ev, AV, Dedysh, SN(2008). Inadequacy of enrichment culture technique for assessing the structure of methanotrophic communities in peat soil. Microbiology. 77. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 504--507. SP MAIK Nauka/Interperiodica