プロフィール詳細

プロジェクトを作成

★★★★★

☆☆☆☆☆

★★★★★

☆☆☆☆☆

Amrutha K.に依頼

India

Freelance Bioinformatician & Biotechnologist | Expert in R & Python Basic Medical coding skills

プロフィール概要

I am an MSc Bioinformatics student at Pondicherry University (CGPA: 8.30) specialising in cancer genomics, transcriptomics, and computational biology. My core expertise lies in end-to-end RNA-seq analysis, survival modelling, pathway enrichment, and machine learning applied to biological data, with hands-on proficiency in Python, R, and Linux-based NGS workflows. Featured project — StemQuant My primary research project is StemQuant, a pan-cancer web application I designed and built from scratch for tumor stemness quantification and clinical outcome prediction. Using TCGA transcriptomic data across GBM, LGG, and LIHC cancer types, I built a complete RNA-seq pipeline (FastQC, HISAT2/STAR, DESeq2/edgeR), performed Kaplan-Meier and Cox regression survival analysis, conducted GO/KEGG pathway enrichment using clusterProfiler, and developed a pan-cancer ML prediction model using scikit-learn. The application is deployed as an interactive Streamlit web app with login, dashboard, prediction, and history modules. Stemness scores were validated against ESC signatures from the GEO database. (github.com/AmruthaKantheti/StemQuant) Additional research experience I have analysed diagnostic RT-PCR data for COVID-19 detection using statistical methods, and presented research on probiotic microorganisms and their therapeutic roles at a university seminar. I also completed a hybrid internship in medical coding at Orion Solutions, gaining practical experience with ICD-10-CM, CPT, and HCPCS systems and medical billing workflows. Technical skills I work fluently in Python, R, Perl, SQL, Java, and C++. My bioinformatics toolkit includes DESeq2, edgeR, clusterProfiler, TCGAbiolinks, BLAST, UCSC Genome Browser, STRING, and the TCGA and GEO databases. For structural bioinformatics I use PyMOL, AutoDock4, GROMACS, and Modeller. I am comfortable building and deploying data-driven web applications using Streamlit and SQLite. Education M.Sc. Bioinformatics, Pondicherry University (2024–present) · B.Sc. Biotechnology, Biochemistry & Chemistry, Aditya Degree College for Women (GPA: 9.18, 2020–2023)

専門分野

• ★ Stem Cell Research
• ★ Bioinformatics
• ★ R
• ☆ Computational Biology
• ☆ Biochemistry
• ☆ Biochemical Assays
• ☆ Structural Biology
• ☆ Cell Biology
• ☆ Microscopy
• ☆ Electron Microscopy
• ☆ Fluorescence Microscopy
• ☆ Biomarker Discovery
• ☆ Python

サービス

• Research
• Consulting
• Data & AI
• Product Development

Research User Research, Gap Analysis

Consulting Healthcare Consulting

Data & AI Statistical Analysis, Data Visualization

Product Development Material Sourcing

職務経験

Postgraduate

Pondicherry University

7月 2024 - 現在

Academic

Pondicherry University

11月 2025 - 4月 2026

学歴

MSc.

Pondicherry University

7月 2024 - 5月 2026

BSc

Aditya degree college

6月 2020 - 5月 2023

認定資格

• Medical coding

  Orion Solutions

  11月 2023 - 現在