プロフィール詳細

プロジェクトを作成

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Anna H.に依頼

United States

PhD Biologist | Bioinformatics & Statistical Analyses | Technical Writing & Grant Funding | Teaching and Mentorship

プロフィール概要

I hold a PhD in Environmental Science from UC Berkeley, specializing in molecular ecology and evolutionary biology with advanced expertise in bioinformatics and data analytics. As a postdoctoral research at the California Academy of Sciences, I pioneered novel Nanopore sequencing protocols for DNA from museum specimens, enabling cost-effective high-throughput analysis of degraded samples. In my current faculty position, I conduct cutting edge biodiversity research in addition to teaching and mentoring students. I possess extensive technical skills in: Data Analytics: Python, R, Bash, and machine learning for complex genomic datasets and synthesis with other data sources, including environmental data DNA Sequencing: End-to-end classic/NGS/third-gen workflow design (Sanger, Illumina, Nanopore) Technical Solutions: Custom pipeline development for large-scale biodiversity data and complex disconnected data sources Scientific Writing: 11 papers, 6 peer-reviewed first-authorships, $1M+ secured grants (NSF, Fulbright, state funding) My cross-disciplinary approach combines rigorous research design with actionable data insights, delivering: Reproducible analyses for conservation genomics and other complex data Competitive funding proposals and technical manuscripts with high success rates Optimized pipelines for sample preparation, sequencing, bioinformatic processing and statistical analyses In addition, I have taught four courses and mentored over 30 students across age ranges. Through this, I have developed strong skills in transforming complex topics into digestible information. I am capable to developing accessible courses and workshops, as well as provide guidance on curriculum.

専門分野

• ☆ Evolutionary Biology
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ Molecular Evolution
• ☆ PCR
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Genome Sequencing
• ☆ RNA Sequencing
• ☆ Molecular Ecology
• ☆ Data Analysis
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Data Collection
• ☆ Data Manipulation
• ☆ Machine Learning
• ☆ Data Cleaning
• ☆ Earth & Atmospheric Science
• ☆ Geographic Information Systems (GIS)
• ☆ Ecology
• ☆ Applied Ecology
• ☆ Ecological Restoration
• ☆ Conservation Biology
• ☆ Conservation Genetics
• ☆ Biodiversity
• ☆ Taxonomy/Classification
• ☆ Biological Taxonomy/Classification
• ☆ Phylogenetics
• ☆ Population Genetics
• ☆ Landscape Ecology
• ☆ Python
• ☆ R

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, General Proofreading & Editing

Research Meta-Research, Fact Checking, Gray Literature Search, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Data Cleaning, Data Processing, Data Insights

Product Development Concept Development

職務経験

Research Faculty

CSU Fullerton

4月 2025 - 現在

Postdoctoral Researcher

California Academy of Sciences

6月 2023 - 現在

学歴

Ph.D. (Environmental Science, Policy and Management )

University of California Berkeley

8月 2016 - 5月 2023

B.S. (Zoology)

North Carolina State University

9月 2013 - 5月 2016

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Anna Holmquist, Holly Tavris, Grace Kim, Lauren Esposito, Brian Fisher, Athena Lam (2025). Towards Large‐Scale Museomics Projects: A Cost‐Effective and High‐Throughput Extraction Method for Obtaining Historical DNA From Museum Insect Specimens . Molecular Ecology Resources.

Rosemary Gillespie, Anna J. Holmquist (2025). Reading palms to characterize islands . Science.

Anna J. Holmquist, R. J. Cody Markelz, Ciera C. Martinez, Rosemary G. Gillespie (2024). The importance of habitat type and historical fire regimes in arthropod community response following large‐scale wildfires . Global Change Biology.

Seira A Adams, Natalie R Graham, Anna J Holmquist, Monica M Sheffer, Emma C Steigerwald, Ruta Sahasrabudhe, Oanh Nguyen, Eric Beraut, Colin Fairbairn, Samuel Sacco, et al. (2023). Reference genome of the long-jawed orb-weaver, Tetragnatha versicolor (Araneae: Tetragnathidae) . Journal of Heredity.

Anna J. Holmquist, Seira A. Adams, Rosemary G. Gillespie (2023). Invasion by an ecosystem engineer changes biotic interactions between native and non‐native taxa . Ecology and Evolution.

HOLMQUIST, A. J. & GILLESPIE, R. G. (2022) Finding spider woman: the past and present role of women in arachnology Arachnology 19 (Special Issue): 126–136 .

(2021). Access to public parks, drinking fountains, and clean public drinking water in the Bay Area is not driven by income . Journal of Emerging Investigators.

(2017). Changes in spider community composition are associated with urban temperature, not herbivore abundance . Journal of Urban Ecology.

PREPRINT

Anna J. Holmquist, Holly Tavris, Grace Kim, Lauren A. Esposito, Brian L. Fisher, Athena Lam (2024). Towards large-scale museomics projects: a cost-effective and high-throughput extraction method for obtaining historical DNA from museum insect specimens .

ENCYCLOPEDIA ENTRY

Anna Holmquist and Rosemary G. Gillespie(2021). Islands as Evolutionary Laboratories . Evolutionary Biology. Oxford University Press