プロフィール詳細

プロジェクトを作成

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Dr. Archana V.に依頼

Germany

Bioinformatician | Expert in scRNA-seq, Spatial Transcriptomics & NGS Analysis | 7+ years experience

プロフィール概要

I am Bioinformatician with deep expertise in Next-Generation Sequencing (NGS) data analysis. Having analyzed complex datasets for peer-reviewed publications, I transform raw data into meaningful biological insights, backed by a strong understanding of experimental biology. Services I Provide: scRNA-Seq: End-to-end analysis: QC, dimensionality reduction (PCA/UMAP), clustering, cell-type annotation, and trajectory inference (Seurat/Bioconductor). Spatial Transcriptomics: Integrating spatial data with scRNA-seq, mapping gene expression to tissue morphology, and identifying spatial genes. Bulk RNA-Seq: FastQC, alignment, differential expression (DESeq2), and functional enrichment (GO/KEGG). Data Visualization: Publication-ready, high-resolution figures in R (ComplexHeatmap, ggplot2, Volcano plots). Tools & Technologies: Languages: R (Tidyverse, Bioconductor), Bash/Linux. Data Types: FASTQ, BAM, VCF, Count Matrices. Why Choose Me? Academic Rigor: Methods based on current literature. Reproducibility: Clean code and detailed reports.

専門分野

• ★ RNA Sequencing
• ★ Bioinformatics
• ★ Gene & Protein Expression Analysis
• ☆ Molecular Biology
• ☆ Biotechnology & Bioengineering
• ☆ Information Technology
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Systems Biology
• ☆ Structural Bioinformatics
• ☆ Information Retrieval
• ☆ R

サービス

• Writing
• Research
• Consulting
• Data & AI

Writing General Proofreading & Editing

Research Meta-Research, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Data Visualization, Big Data Analytics, Data Processing, Data Insights

職務経験

PhD Fellow

UNIVERSITY HOSPITAL MUENSTER

4月 2023 - 現在

PhD student

Universitätsklinikum Münster

4月 2023 - 現在

Project Associate

CSIR-CCMB

2月 2019 - 3月 2023

DBT-trainee

Biotech Park

12月 2018 - 2月 2019

学歴

Mtech biotechnology

Amity University

5月 2016 - 6月 2018

認定資格

• MTech

  amity university

  5月 2018 - 現在

出版物

JOURNAL ARTICLE

Lisa H Apken, Hannah Barz, Stephanie Beel, Esther Michalke, René Rasche, Andrea Ricker, Harald Nüsse, Jürgen Klingauf, Kornelius Kerl, et al., Archana Verma (2025). RalGAP complexes control secretion and primary cilia in pancreatic disease . Life Science Alliance.

Archana Verma, Abhishek Goel, Niladri Koner, Gowthaman Gunasekaran, Vegesna Radha (2024). Correction: Development and tissue specific expression of RAPGEF1 (C3G) transcripts having exons encoding disordered segments with predicted regulatory function . Molecular Biology Reports.

Archana Verma, Abhishek Goel, Niladri Koner, Gowthaman Gunasekaran, Vegesna Radha (2024). Development and tissue specific expression of RAPGEF1 (C3G) transcripts having exons encoding disordered segments with predicted regulatory function . Molecular Biology Reports.

Archana Verma, Abhishek Goel, Niladri Koner, Gowthaman Gunasekaran, Vegesna Radha (2024). Development and tissue specific expression of RAPGEF1 (C3G) transcripts having exons encoding disordered segments with predicted regulatory function . Molecular Biology Reports.

Archana Verma, Anja Fischer, Thomas K. Albert, Natalia Moreno, Marta Interlandi, Jana Mormann, Selina Glaser, Paurnima Patil, Flavia W. de Faria, Mathis Richter, et al. (2024). Lack of SMARCB1 expression characterizes a subset of human and murine peripheral T-cell lymphomas . Nature Communications.

Galande S, Verma A, Mall R, Parsa KV, Tokala RK, Bynigeri R, Pondugala PK, Vemula K, Latha SS, Sowpati DT, et al. (2024). Modulation of nuclear receptor 4A1 expression improves insulin secretion in a mouse model of chronic pancreatitis . Pancreas.

Schoof M, Godbole S, Albert TK, Dottermusch M, Walter C, Ballast A, Qin N, Olivera MB, Göbel C, Neyazi S, et al. (2023). Mouse models of pediatric high-grade gliomas with MYCN amplification reveal intratumoral heterogeneity and lineage signatures . Nature communications.

Vishnu VV, Muralikrishna B, Verma A, Nayak SC, Sowpati DT, Radha V, Shekar PC (2021). C3G Regulates STAT3, ERK, Adhesion Signaling, and Is Essential for Differentiation of Embryonic Stem Cells . Stem cell reviews and reports.

Archana Verma and Shweta Singh Chauhan and Vaishali Pankaj and Neha Srivastva and Prachi Srivastava(2020). Network Biology Approaches to Identify the Drug Lead Molecule for Neurodevelopmental Disorders in Human . The Open Bioinformatics Journal. 13. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 15--24. Bentham Science Publishers Ltd.

Avvaru AK, Sharma D, Verma A, Mishra RK, Sowpati DT (2020). MSDB: a comprehensive, annotated database of microsatellites . Nucleic acids research.