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プロフィール詳細

プロジェクトを作成

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Dr. Baiba V.に依頼

Germany

プロフィール概要

I am a Freelancer Bioinformatician with 10+ years of experience in Bioinformatics and Systems medicine, as well as 4+ years of experience in the Wet Lab. I have experience analyzing genomic data, such as SNP arrays and Exome-seq, as well as transcriptome profiles, i.e. microarrays, RNA-seq, as well as RT-qPCR data. Currently, my major focus is integrative Multi-OMICS Network Analysis in the context of Precision Medicine.

専門分野

• ☆ Biology/Life Sciences
• ☆ Microbiology
• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Microarrays
• ☆ Omics
• ☆ Transcriptomics
• ☆ RNA Sequencing
• ☆ Biotechnology & Bioengineering
• ☆ Data Analysis
• ☆ Data Processing
• ☆ Computational Sciences
• ☆ Precision Medicine
• ☆ Medical Sciences
• ☆ Technical & Scientific Writing

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

職務経験

Principal Investigator

Riga Stradiņš University

12月 2019 - 現在

CEO

net-OMICS

8月 2017 - 現在

Postdoctoral Research Fellow

The German Heart Centre Munich, Department of Cardiovascular Diseases in Adults, Technical University Munich

8月 2013 - 現在

Senior Scientist

Institute of Food Safety, Animal Health and Environment “BIOR”

9月 2018 - 11月 2019

Postdoctoral Research Fellow

The German Heart Centre Munich, Technical University Munich

8月 2013 - 8月 2018

学歴

PhD

Technical University Munich, Laboratory of Stem Cell Physiology, 3rd Department of Internal Medicine, Klinikum rechts der Isar | Institute for Bioinformatics and Systems Biology, Helmholtz Zentrum Munich

3月 2009 - 8月 2013

PhD (3rd Department of Internal Medicine, Laboratory of Stem Cell Physiology)

Klinikum rechts der Isar der Technischen Universität München

3月 2009 - 7月 2013

PhD

Helmholtz Zentrum München Institute of Bioinformatics and Systems Biology

3月 2009 - 7月 2013

MSc ( Department of Genome Oriented Bioinformatics)

Technical University Munich

10月 2006 - 3月 2009

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

(2019). Machine Learning Approaches for Epidemiological Investigations of Food-Borne Disease Outbreaks . Frontiers in microbiology.

(2018). Genetics of coronary artery disease in the light of genome-wide association studies . Clinical research in cardiology : official journal of the German Cardiac Society.

(2018). Integrating Genes Affecting Coronary Artery Disease in Functional Networks by Multi-OMICs Approach . Frontiers in cardiovascular medicine.

Lempiäinen, H., Brænne, I., Michoel, T., Tragante, V., Vilne, B., Webb, T.R., Kyriakou, T., Eichner, J., Zeng, L., Willenborg, C., et al.(2018). Network analysis of coronary artery disease risk genes elucidates disease mechanisms and druggable targets . Scientific Reports. 8. (1).

Schunkert, H., von Scheidt, M., Kessler, T., Stiller, B., Zeng, L., Vilne, B.(2018). Genetics of coronary artery disease in the light of genome-wide association studies . Clinical Research in Cardiology. 107. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2-9.

Kessler, T., Wobst, J., Wolf, B., Eckhold, J., Vilne, B., Hollstein, R., Von Ameln, S., Dang, T.A., Sager, H.B., Rumpf, P.M., et al.(2017). Functional Characterization of the GUCY1A3 Coronary Artery Disease Risk Locus . Circulation. 136. (5). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 476-489.

Vilne, B., Skogsberg, J., Foroughi Asl, H., Talukdar, H.A., Kessler, T., Björkegren, J.L.M., Schunkert, H.(2017). Network analysis reveals a causal role of mitochondrial gene activity in atherosclerotic lesion formation . Atherosclerosis. 267. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 39-48.

Kessler, T., Vilne, B., Schunkert, H.(2016). The impact of genome-wide association studies on the pathophysiology and therapy of cardiovascular disease . EMBO Molecular Medicine. 8. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 688-701.

Kessler, T., Erdmann, J., Vilne, B., Bruse, P., Kurowski, V., Diemert, P., Schunkert, H., Sager, H.B.(2016). Serum microRNA-1233 is a specific biomarker for diagnosing acute pulmonary embolism . Journal of Translational Medicine. 14. (1).

Franke, K., Vilne, B., da Costa, O.P., Rudelius, M., Peschel, C., Oostendorp, R.A.J., Keller, U.(2015). In vivo hematopoietic Myc activation directs a transcriptional signature in endothelial cells within the bone marrow microenvironment . Oncotarget. 6. (26). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 21827-21839.

Brnne, I., Civelek, M., Vilne, B., Di Narzo, A., Johnson, A.D., Zhao, Y., Reiz, B., Codoni, V., Webb, T.R., Asl, H.F., et al.(2015). Prediction of causal candidate genes in coronary artery disease loci . Arteriosclerosis, Thrombosis, and Vascular Biology. 35. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2207-2217.

Istvánffy, R., Vilne, B., Schreck, C., Ruf, F., Pagel, C., Grziwok, S., Henkel, L., Prazeres Da Costa, O., Berndt, J., Stümpflen, V., et al.(2015). Stroma-derived connective tissue growth factor maintains cell cycle progression and repopulation activity of hematopoietic stem cells in vitro . Stem Cell Reports. 5. (5). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 702-715.

(2011). Towards a quantitative understanding of stem cell-niche interaction: experiments, models, and technologies .

Luo, Q., Pagel, P., Vilne, B., Frishman, D.(2011). DIMA 3.0: Domain interaction map . Nucleic Acids Research. 39. (SUPPL. 1).

Istvanffy, R., Kröger, M., Eckl, C., Gitzelmann, S., Vilne, B., Bock, F., Graf, S., Schiemann, M., Keller, U.B., Peschel, C., et al.(2011). Stromal pleiotrophin regulates repopulation behavior of hematopoietic stem cells . Blood. 118. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2712-2722.