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プロフィール詳細
プロジェクトを作成
★★★★★
☆☆☆☆☆
Ben S.に依頼
Spain

Freelance in Scientific Computing, Modeling, Simulation, Optimization, ML for Biology and Physics

プロフィール概要
専門分野
サービス
Writing Technical Writing
Research Scientific and Technical Research
Consulting Scientific and Technical Consulting
Data & AI Predictive Modeling, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Data Processing
Product Development Reverse Engineering
職務経験

Solo Founder

Small Startup Founder

1月 2025 - 1月 2026

Postdoctoral Fellow

Donostia International Physics Center

9月 2023 - 7月 2024

Senior Research Associate in Computational DNA/RNA Nanotechnology

Newcastle University

11月 2020 - 8月 2023

Research Associate in Computational Nanobiology

Newcastle University

1月 2016 - 11月 2020

学歴

PhD (Centre for Life, Mind and Society (IAS Research Group))

University of the Basque Country

1月 2010 - 12月 2015

PhD (ICREA-Complex Systems Lab)

Pompeu Fabra University

1月 2010 - 12月 2015

MSc Evolutionary and Adaptive Systems (Department of Informatics)

University of Sussex

10月 2007 - 8月 2009

BSc Artificial Intelligence and Computer Science (Department of Computer Science)

University of Sheffield

9月 2000 - 9月 2003

認定資格

  • none

    None

    1月 2025 - 現在

出版物
PREPRINT
Ben Shirt-Ediss, Arián Ferrero-Fernández, Daniele De Martino, Leonardo Bich, Alvaro Moreno, Kepa Ruiz-Mirazo (2024). Modelling the prebiotic origins of regulation & agency in evolving protocell ecologies .
Ben Shirt-Ediss, Jordan Connolly, Juan Elezgaray, Emanuela Torelli, Silvia Adriana Navarro, Jaume Bacardit, Natalio Krasnogor (2023). Reverse Engineering DNA Origami Nanostructure Designs from Raw Scaffold and Staple Sequence Lists .
JOURNAL ARTICLE
Ben Shirt-Ediss, Jordan Connolly, Juan Elezgaray, Emanuela Torelli, Silvia Adriana Navarro, Jaume Bacardit, Natalio Krasnogor (2023). Reverse engineering DNA origami nanostructure designs from raw scaffold and staple sequence lists . Computational and Structural Biotechnology Journal.
A last-in first-out stack data structure implemented in DNA <head> <META HTTP-EQUIV="Refresh" CONTENT="0;URL=/servlet/useragent"> </head> . Nature Communications.
Harold Fellermann, Ben Shirt‐Ediss, Jerzy Kozyra, Matt Linsley, Dennis Lendrem, John Isaacs, Thomas Howard (2019). Design of experiments and the virtual PCR simulator: An online game for pharmaceutical scientists and biotechnologists . Pharmaceutical Statistics.
Ben Shirt-Ediss, Sara Murillo-S&#225;nchez, Kepa Ruiz-Mirazo(2017). Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research . Beilstein Journal of Organic Chemistry. 13. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1388--1395. Beilstein Institut
Ben Shirt-Ediss, Ricard Sol&#233;, Kepa Ruiz-Mirazo(2015). Emergent Chemical Behavior in Variable-Volume Protocells . Life. 5. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 181--211. {MDPI} {AG}
Ben Shirt-Ediss, Kepa Ruiz-Mirazo, Fabio Mavelli, Ricard V. Sol&#233;(2014). Modelling Lipid Competition Dynamics in Heterogeneous Protocell Populations . Scientific Reports. 4. (1). Springer Nature
OTHER
Ben Shirt-Ediss, Harold Fellermann, Jerzy W. Koryza, Matthew Linsley, Dennis W. Lendrem, Thomas P. Howard(2018). The PCR Simulator: an on-line application for teaching Design of Experiments and the polymerase chain reaction . Cold Spring Harbor Laboratory
Ben Shirt-Ediss(2011). Dynamical Systems Analysis of a Protocell Lipid Compartment . Advances in Artificial Life. Darwin Meets von Neumann. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 230--239. Springer Berlin Heidelberg
CONFERENCE PAPER
Ben Shirt-Ediss, Jerzy Kozyra, Harold Fellermann, Annunziata Lopiccolo, Natalio Krasnogor(2017). Optimizing nucleic acid sequences for a molecular data recorder . Proceedings of the Genetic and Evolutionary Computation Conference on - GECCO '17. {ACM} Press
Ben Shirt-Ediss, ICREA-Complex Systems Lab, Institut de Biologia Evolutiva, CSIC-UPF, Barcelona, Spain; Logic and Philosophy of Science Department, University of The Basque Country, San Sebast&#237;an, Spain, Ricard Sol&#233;, et al.(2015). A New View of Protocell Metabolism . 07/20/2015-07/24/2015. The {MIT} Press
Ben Shirt-Ediss, Ricard Sol&#233;, Kepa Ruiz-Mirazo(2013). Steady state analysis of a vesicle bioreactor with mechanosensitive channels . Advances in Artificial Life, ECAL 2013. {MIT} Press