プロフィール詳細

プロジェクトを作成

★★★★★

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☆☆☆☆☆

Dr. Fabio G.に依頼

Netherlands

AI solutions for life science and manufacturing | analytics R&D for industry & academia

プロフィール概要

Coming from an entrepreneurial family, a mathematician turned to data science, quantitative research and bioinformatics. A versatile analytical mind with strong attention to details, and more than 15 years of experience in communicating with domain experts and users. An industrial researcher and consultant with international academic experience. Always happy to acquire new quantitative skills, especially machine learning and statistical methods, and capable of doing it autonomously. Industrial data science experience: data science, machine learning, causal discovery, design and implement analytical method validation plans for predictive software, data analysis, deep learning, QC design, dashboard & reporting systems, statistical software development under GxP. Academic experience: applied algorithm development, data analysis, feature design, statistical modeling, data processing pipeline development, applied control theory, PDEs/ODEs modeling, design machine learning approaches. Bioinformatics&biotech: bacterial and human NGS data processing and analysis, metagenomics, ELISPOT, precision medicine for oncology, antibiotic resistance, mass-spectrometry data. Also on BBC News: https://www.bbc.com/news/health-xxxxxxxx Podcast guest: https://www.youtube.com/watch?v=Ng1y5lLP0zQ Services provided: - Consulting services for companies and individuals that are at the start of their data-driven journey: provide directions, improve data literacy, analyze data for decision making - Develop AI solutions for companies in life science (biotech, diagnostics, biomedical) and manufacturing - AI technical writing and software documentation: as a former academic in quantitative methods for biomedical research, I have years of experience in writing explanations of algorithms and analytical methods that are accessible to experts of other domains - Data science services for academics

専門分野

• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Biostatistics
• ☆ Mathematical Biology
• ☆ Molecular Biology
• ☆ Omics
• ☆ Genomics
• ☆ Gene Expression Analysis
• ☆ Manufacturing
• ☆ Data Analysis
• ☆ Computer Simulation/Computational Modeling
• ☆ Algorithm Design
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Data Exploration
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Machine Learning
• ☆ Data Mining
• ☆ Data Cleaning
• ☆ Artificial Intelligence
• ☆ Statistics
• ☆ Applied Statistics
• ☆ Health Data Analysis
• ☆ Bioinformatics
• ☆ Systems Biology
• ☆ Applied Mathematics
• ☆ Mathematical Models
• ☆ Mathematical Optimization
• ☆ Differential Equations
• ☆ Computational Mathematics
• ☆ Pure Mathematics
• ☆ Calculus
• ☆ Mathematical Analysis
• ☆ Python
• ☆ Matlab
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Markup Languages
• ☆ Hypothesis
• ☆ Peer Review

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing, General Proofreading & Editing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Prototyping

職務経験

Data Scientist

In Ovo BV

4月 2022 - 2月 2023

Data Scientist

In Ovo

4月 2022 - 2月 2023

Senior Data Scientist

Machine2Learn BV

4月 2018 - 3月 2022

Senior Data Scientist

Machine2Learn

4月 2018 - 3月 2022

Bioinformatic Data Scientist

BioNTech AG

10月 2016 - 3月 2018

Bioinformatic Data Scientist

BioNTech (Germany)

10月 2016 - 3月 2018

Bioinformatics/Biostatistics Scientist

Molecular Health GmbH

8月 2015 - 9月 2016

Biostatistics/Bioinformatics Scientist

Molecular Health GmbH

8月 2015 - 8月 2016

Research Fellow

University of Exeter

10月 2012 - 9月 2014

Research Fellow

University of Exeter

10月 2012 - 9月 2014

学歴

Data Science and Bioinformatics

Radboud University Nijmegen

10月 2008 - 9月 2012

PhD (ICIS - Intelligent Systems - Machine Learning Group)

Radboud Universiteit Nijmegen

10月 2008 - 9月 2012

Mathematics

Università di Pisa

11月 1998 - 11月 2007

MSc in Mathematics (Department of Mathematics)

Università degli Studi di Pisa

10月 1998 - 11月 2007

認定資格

• Neural Networks and Deep Learning

  coursera

  https://coursera.org/share/bd1aeeea58750fb2bad633900523564c

  7月 2018 - 現在

出版物

JOURNAL ARTICLE

Fabio Gori, Given Names Deactivated Family Name Deactivated, Mark Hewlett, Sarah Duxbury, Ivana Gudelj, Robert Beardmore(2017). The unconstrained evolution of fast and efficient antibiotic-resistant bacterial genomes . Nature Ecology & Evolution. 1. (3). Springer Science and Business Media {LLC}

R. E. Beardmore, R. Pena-Miller, F. Gori, J. Iredell(2017). Antibiotic Cycling and Antibiotic Mixing: which one best mitigates antibiotic resistance? . Molecular Biology and Evolution. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString msw292. Oxford University Press ({OUP})

Gori, Fabio, Mavroeidis, Dimitrios, Jetten, Mike S. M., Marchiori, Elena(2017). The importance of Chargaff's second parity rule for genomic signatures in metagenomics . bioRxiv. Cold Spring Harbor Labs Journals

Fabio Gori, Ayari Fuentes-Hernandez, Jessica Plucain, Rafael Pena-Miller, Carlos Reding, Gunther Jansen, Hinrich Schulenburg, Ivana Gudelj, Robert Beardmore(2015). Using a Sequential Regimen to Eliminate Bacteria at Sublethal Antibiotic Dosages . PLOS Biology. 13. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString e1002104. Public Library of Science ({PLoS})

Gori, F., Tringe, S. G., Folino, G., van Hijum, S. A. F. T., Op den Camp, H. J. M., Jetten, M. S. M., Marchiori, E.(2013). Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes . BMC Genomics.

Gori, F., Folino, G., Jetten, M. S. M., Marchiori, E.(2011). MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks . Bioinformatics. 27. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 196-203.

Gori, F., Tringe, S. G., Kartal, B., Marchiori, E., Jetten, M. S. M.(2011). The metagenomic basis of anammox metabolism in Candidatus ‘Brocadia fulgida’ . Biochemical Society Transactions. 39. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1799 -- 1804.

CONFERENCE PAPER

Gori, F., Mavroeidis, D., Jetten, M. S. M., Marchiori, E.(2011). Genomic signatures for metagenomic data analysis: exploiting the reverse complementarity of tetranucleotides . Proceedings of the 5th IEEE International Conference on Systems Biology (ISB). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 149 -154.

Folino, G., Gori, F., Jetten, M. S. M., Marchiori, E.(2009). Clustering Metagenome Short Reads using Weighted Proteins . Proceedings of the 7th European Conference on Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics (EvoBIO). (5483). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 152-163.

G. Folino, F. Gori, M. S. M. Jetten, E. Marchiori(2009). Evidence-based Clustering of Reads and Taxonomic Analysis of Metagenomic Data . Proceedings of the 4th IAPR International Conference in Pattern Recognition in Bioinformatics (PRIB). (5780). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 102-112.