プロフィール詳細

プロジェクトを作成

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Jérémy M.に依頼

France

Bioinformatician & Data Engineer | 5+ Yrs in Biology Industry | NGS Data Analysis & Pipeline Development (Python, R)

プロフィール概要

BRIDGING COMPUTATIONAL BIOLOGY & SCALABLE DATA ENGINEERING I am a Bioinformatician & Data Engineer (5+ years exp.) specializing in the development of robust pipelines for complex biological datasets. My profile combines high-level academic research (INSERM) with industrial consulting (Alliance4U, Ascentry) to deliver scientifically rigorous, production-ready solutions. CORE EXPERTISE: ● NGS & MULTIMODAL: Spatial transcriptomics, multiplexed imaging (MANTIS), and single-cell datasets. ● DATA ENGINEERING: Scalable R&D pipelines, data modeling (SQL), and workflow automation. ● IMMUNOLOGY: Expert in skin immunity, mast cell populations, and mRNA-1273 profiling. TECHNICAL STACK: ● Languages: Python (Advanced), R/Bioconductor, SQL. ● Environment: Linux/HPC, Docker, Data Engineering best practices. ● Fields: Immunology, Allergology, Vaccinology. SELECTED ACHIEVEMENTS: ● Co-authored 5+ peer-reviewed papers (Science Advances, JEM, Allergy). ● Developed innovative 3D deconvolution methods for skin immune architecture. ● Invited speaker at Genotoul (GeT) on advanced genomic technologies. I turn "noisy" biological data into actionable insights with clean, reproducible, and documented results. Whether you need a custom analysis pipeline or a scalable data infrastructure for your R&D, I provide high-standard deliverables.

専門分野

• ★ Computational Biology
• ★ Transcriptomics
• ★ Bioinformatics
• ☆ Biostatistics
• ☆ Omics
• ☆ Next Generation Sequencing (NGS)
• ☆ Data Architecture
• ☆ Python
• ☆ SQL
• ☆ R
• ☆ Allergy & Clinical Immunology
• ☆ Technical & Scientific Writing

サービス

• Research
• Consulting
• Data & AI
• Product Development

Research Scientific and Technical Research

Consulting Digital Strategy Consulting, Scientific and Technical Consulting

Data & AI Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Prototyping

職務経験

Data Engineer

BYG4LAB

11月 2024 - 現在

Data Engineer

ALLIANCE4U

9月 2023 - 10月 2024

Bioinformatician (IE)

INSERM Delegation Regionale Occitanie Pyrenees

7月 2021 - 9月 2023

学歴

MSc Bioinformatics and System Biology

Paul Sabatier University

9月 2019 - 6月 2021

BSc Biochemistry, Molecular Biology and Microbiology

Paul Sabatier University

9月 2018 - 6月 2019

認定資格

• ISTQB Foundation v4

  CFTL

  https://app.skillsclub.com/credential/49138-ddec7ac423726b6ad77befde5ad293049365e4a8c6fa32c225b2298663275ac8

  12月 2023 - 現在

出版物

JOURNAL ARTICLE

Manon Scholaert, Mathias Peries, Emilie Braun, Jeremy Martin, Nadine Serhan, Alexia Loste, Audrey Bruner, Lilian Basso, Beno&#238;t Chaput, Eric Merle, et al. (2024). Multimodal profiling of biostabilized human skin modules reveals a coordinated ecosystem response to injected <scp>mRNA</scp>‐1273 <scp>COVID</scp>‐19 vaccine . Allergy.

Marie Tauber, Lilian Basso, Jeremy Martin, Luciana Bostan, Marlene Magalhaes Pinto, Guilhem R. Thierry, Ra&#239;ssa Houmadi, Nadine Serhan, Alexia Loste, Camille Bl&#233;riot, et al. (2023). Landscape of mast cell populations across organs in mice and humans . Journal of Experimental Medicine.

Manon Scholaert, Raissa Houmadi, Jeremy Martin, Nadine Serhan, Marie Tauber, Emilie Braun, Lilian Basso, Eric Merle, Pascal Descargues, Manuelle Viguier, et al. (2023). 3D deconvolution of human skin immune architecture with Multiplex Annotated Tissue Imaging System . Science Advances.

Manon Defaye and Mircea C. Iftinca and Vinicius M. Gadotti and Lilian Basso and Nasser S. Abdullah and Melissa Cumenal and Francina Agosti and Ahmed Hassan and Robyn Flynn and Jeremy Martin and Vanessa Soubeyre and Gaëtan Poulen and Nicolas Lonjon and Florence Vachiery-Lahaye and Luc Bauchet and Pierre Francois Mery and Emmanuel Bourinet and Gerald W. Zamponi and Christophe Altier(2022). The neuronal tyrosine kinase receptor ligand ALKAL2 mediates persistent pain . Journal of Clinical Investigation. American Society for Clinical Investigation

Marie Tauber and Raïssa Houmadi and Manon Scholaert and J{\'{e}}r{\'{e}}my Martin and Nadine Serhan and Manuelle Viguier and Cristina Bulai Livideanu and Christian Aquilina and Carle Paul and Laurence Lamant and Audrey Nosbaum and Jean Kanitakis and C{\'{e}}cile Lesort and Denis Jullien and Nicolas Gaudenzio(2021). Développement d’une méthode d’imagerie multiplexée de la peau : application aux lésions cutanées contemporaines de la COVID-19 . Annales de Dermatologie et de Vénéréologie - FMC. 1. (8). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString A111. Elsevier {BV}