プロフィール詳細

プロジェクトを作成

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Dr. Manish R.に依頼

India

PhD Bioinformatician | RNA-seq, Bacterial Genomics, Metagenomics, Phylogenetics, Host-pathogen and microbiome studies

プロフィール概要

I am a PhD-trained bioinformatician with research and project experience in bacterial genomics, comparative genomics, transcriptomics, metagenomics, microbiome analysis, and phylogenetics. I help researchers and life science teams turn sequencing data into clear, reliable, publication-ready results. My work includes RNA-seq analysis, bacterial whole-genome analysis, genome assembly and annotation, comparative genomics, microbial community profiling, phylogenetic analysis, and custom data analysis in R and Python. I can support projects from raw FASTQ files to final figures, summary reports, and biological interpretation. I have contributed to multiple peer-reviewed publications and have worked across academic and applied research settings. I focus on accuracy, reproducibility, and practical communication so clients receive results they can confidently use for manuscripts, reports, presentations, or next-step decisions. Typical deliverables include: Quality assessment and processed data summary Differential expression, comparative, or functional analysis results High-quality tables and figures for publication or presentation Clear, concise interpretation of key findings Final documented report with actionable conclusions I am especially well suited for projects involving microbial genomics, Phylogenetics, plant-microbe interactions, RNA-seq, and microbiome/metagenome datasets.

専門分野

• ★ Next Generation Sequencing (NGS)
• ★ Bioinformatics
• ★ Phylogenetics
• ☆ Botany
• ☆ Plant Pathology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Mycology/Fungi
• ☆ Agricultural Microbiology
• ☆ Molecular Biology
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Genomics
• ☆ Genome Sequencing
• ☆ Clinical Microbiology
• ☆ Python
• ☆ R

サービス

• Writing
• Research
• Consulting

Writing Technical Writing

Research Scientific and Technical Research

Consulting Scientific and Technical Consulting

職務経験

Bioinformatician

Self-employed

11月 2023 - 現在

Postdoctoral Scholar

Pennsylvania State University

4月 2023 - 10月 2023

SPA

CCMB

10月 2021 - 3月 2023

Research Associate-II

NBRI

7月 2018 - 8月 2020

PhD. Scholar

Institute of Microbial Technology

8月 2011 - 4月 2018

DBT-JRF

CDFD

10月 2009 - 5月 2011

CSIR-JRF

NCL

7月 2008 - 9月 2009

Project-JRF

CSMCRI

12月 2007 - 5月 2008

学歴

PhD. (Bacterial genetics, genomics and evolution, High throughput genomics, Metagenomics )

Institute of Microbial Technology

2011 - 2018

MSc. Marine Biotechnology (Department of Biotechnology)

Goa University

2005 - 2007

BSc. Biotechnology (Biotechnology)

Vinoba Bhave University

2001 - 2004

認定資格

• Introduction to Genomic Technologies

  Johns Hopkins University (Coursera)

  https://coursera.org/share/89d4a7dc4db0e5ec08c44fbba983cacd

  10月 2024 - 現在

出版物

JOURNAL ARTICLE

Bose, T., Wasimuddin, Acharya, V., Pinna, N.K., Kaur, H., Ranjan, M., SaiKrishna, J., Nagabandi, T., Varma, B., Tallapaka, K.B., et al.(2023). A cross-sectional study on the nasopharyngeal microbiota of individuals with SARS-CoV-2 infection across three COVID-19 waves in India . Frontiers in Microbiology. 14.

Srivastava, S., Ranjan, M., Bano, N., Asif, M.H., Srivastava, S.(2023). Comparative transcriptome analysis reveals the phosphate starvation alleviation mechanism of phosphate accumulating Pseudomonas putida in Arabidopsis thaliana . Scientific Reports. 13. (1).

Srivastava, S., Anand, V., Kaur, J., Ranjan, M., Bist, V., Asif, M.H., Srivastava, S.(2022). Functional Genetic Diversity and Plant Growth Promoting Potential of Polyphosphate Accumulating Bacteria in Soil . Microbiology Spectrum. 10. (1).

Ranjan, M., Khokhani, D., Nayaka, S., Srivastava, S., Keyser, Z.P., Ranjan, A.(2021). Genomic diversity and organization of complex polysaccharide biosynthesis clusters in the genus Dickeya . PLoS ONE. 16. (2 February).

Bist, V., Niranjan, A., Ranjan, M., Lehri, A., Seem, K., Srivastava, S.(2020). Silicon-Solubilizing Media and Its Implication for Characterization of Bacteria to Mitigate Biotic Stress . Frontiers in Plant Science. 11.

Ranjan, A., Westrick, N.M., Jain, S., Piotrowski, J.S., Ranjan, M., Kessens, R., Stiegman, L., Grau, C.R., Conley, S.P., Smith, D.L., et al.(2019). Resistance against Sclerotinia sclerotiorum in soybean involves a reprogramming of the phenylpropanoid pathway and up-regulation of antifungal activity targeting ergosterol biosynthesis . Plant Biotechnology Journal. 17. (8). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1567-1581.

Baindara, P., Singh, N., Ranjan, M., Nallabelli, N., Chaudhry, V., Pathania, G.L., Sharma, N., Kumar, A., Patil, P.B., Korpole, S.(2016). Laterosporulin10: A novel defensin like class iid bacteriocin from brevibacillus sp. strain SKDU10 with inhibitory activity against microbial pathogens . Microbiology (United Kingdom). 162. (8). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1286-1299.

Rai, R., Ranjan, M., Pradhan, B.B., Chatterjee, S.(2012). Atypical regulation of virulence-associated functions by a diffusible signal factor in xanthomonas oryzae pv. oryzae . Molecular Plant-Microbe Interactions. 25. (6). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 789-801.

Sharma, V., Singh, P.K., Midha, S., Ranjan, M., Korpole, S., Patil, P.B.(2012). Genome sequence of Brevibacillus laterosporus strain GI-9 . Journal of Bacteriology. 194. (5). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1279.

Midha, S., Ranjan, M., Sharma, V., Kumari, S., Singh, P.K., Korpole, S., Patil, P.B.(2012). Genome sequence of Pediococcus pentosaceus Strain IE-3 . Journal of Bacteriology. 194. (16). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 4468-4468.

Sharma, V., Midha, S., Ranjan, M., Pinnaka, A.K., Patil, P.B.(2012). Genome sequence of Xanthomonas axonopodis pv. punicae strain LMG 859 . Journal of Bacteriology. 194. (9). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 2395-2395.

Midha, S., Ranjan, M., Sharma, V., Pinnaka, A.K., Patil, P.B.(2012). Genome sequence of xanthomonas citri pv. Mangiferaeindicae strain LMG 941 . Journal of Bacteriology. 194. (11). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3031.

Pradhan, B.B., Ranjan, M., Chatterjee, S.(2012). XadM, a novel adhesin of Xanthomonas oryzae pv. oryzae, exhibits similarity to Rhs family proteins and is required for optimum attachment, biofilm formation, and virulence . Molecular Plant-Microbe Interactions. 25. (9). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 1157-1170.

OTHER

Bose, T., Wasimuddin, Acharya, V., Pinna, N.K., Kaur, H., Ranjan, M., SaiKrishna, J., Nagabandi, T., Varma, B., Tallapaka, K.B., et al.(2023). Composition of nasopharyngeal microbiota in individuals with SARS-CoV-2 infection across three COVID-19 waves in India . bioRxiv.

Ranjan, A., Westrick, N.M., Jain, S., Piotrowski, J.S., Ranjan, M., Kessens, R., Stiegman, L., Grau, C.R., Smith, D.L., Kabbage, M.(2018). Integrated soybean transcriptomics, metabolomics, and chemical genomics reveal the importance of the phenylpropanoid pathway and antifungal activity in resistance to the broad host range pathogen Sclerotinia sclerotiorum . bioRxiv.