プロフィール詳細

プロジェクトを作成

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Milad E.に依頼

France

+9 years of experience in clinical research, Java programmer, NGS data analyst, AI-based application developer

プロフィール概要

I am a Research Engineer in Bioinformatics at the IMGT® (the international ImMunoGeneTics information system®), Institute of Human Genetics (IGH), CNRS and the University of Montpellier, France. My work focuses on developing advanced computational tools for immunogenetics, improving germline reference databases, and implementing novel analytical features for large-scale immune repertoire analysis. I hold an M.Sc. degree in Human Genetics with a specialization in Bioinformatics. Throughout my academic and professional career, I have gained extensive experience in genomics, immunogenetics, next-generation sequencing (NGS), software development, and computational biology. My research and development expertise includes: Bioinformatics pipeline development for NGS data analysis Variant annotation, filtering, prioritization, and interpretation Whole-exome and whole-genome sequencing (WES/WGS) RNA-seq and transcriptomic data analysis Immunogenetics and immune repertoire analysis Germline reference database development and curation Scientific software engineering in Java and Python AI-assisted genomic data analysis and decision-support tools Scientific writing and manuscript preparation At IMGT, I actively develop and maintain IMGT/V-QUEST and IMGT/HighV-QUEST, internationally recognized tools used by researchers worldwide for immunoglobulin (IG) and T cell receptor (TR) sequence analysis. My recent projects include designing context-specific germline reference systems, implementing haplotype-aware reference selection, improving leader and constant region annotation, optimizing alignment algorithms, and enhancing software performance and usability. My previous research projects have involved: Identification and prioritization of disease-causing genetic variants Functional genomic and transcriptomic analyses RNA-seq differential expression studies Integration of AI approaches into genomic interpretation Development of computational methods for precision medicine Statistical analysis and biological interpretation of high-throughput sequencing data I am proficient in Java, Python, R, SQL, Linux, Git, and modern bioinformatics workflows. I have experience working with VCF, FASTQ, BAM/CRAM, GTF/GFF, and other genomic data formats, as well as commonly used bioinformatics tools and databases. I am available for consulting and collaborative research in bioinformatics, genomics, immunogenetics, software development, AI applications in life sciences, scientific programming, data analysis, and scientific writing. I am committed to delivering reproducible, high-quality, and scientifically rigorous solutions tailored to each project's needs.

専門分野

• ☆ Computational Biology
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ RNA Sequencing
• ☆ Software Engineering
• ☆ Data Analysis
• ☆ Statistics
• ☆ Health Data Analysis
• ☆ Bioinformatics
• ☆ R
• ☆ Medical Sciences
• ☆ Software Development
• ☆ Web Application Development

サービス

• Writing
• Research
• Data & AI

Writing Medical Writing, Audio Transcription, General Proofreading & Editing

Research Meta-Research, Gray Literature Search, Scientific and Technical Research, Systematic Literature Review

Data & AI Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing

職務経験

Research Engineer

Institut de Génétique Humaine

4月 2025 - 現在

CEO and instructor

AD bioinformatics

9月 2016 - 現在

Remote Bioinformatics Analyst

McGill University

3月 2024 - 12月 2025

Clinical WES data analyst

MOM fertility and infertility center

1月 2022 - 4月 2022

Analyst and PCR technician

Payvand medical and specialty laboratory

10月 2018 - 3月 2021

Lab technician

Hazrat Rasoul Akram Hospital

9月 2014 - 9月 2016

学歴

Masters of Science

Tarbiat Modares University

1月 2016 - 1月 2019

Bachelor of sciences (Paramedical sciences department)

Babol University of Medical Science

10月 2010 - 7月 2014

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Milad Eidi, Tohid Ghasemnejad, Yuheng Liang, Khadijeh Hoda Jahanian, Arash Salmaninejad, Seyedeh Sedigheh Abedini, Fabrizzio Horta, Nigel H Lovell, Thantrira Porntaveetus, Mark Grosser, et al. (2026). Comprehensive Evaluation of ACMG/AMP-based Variant Classification Tools . Bioinformatics.

Milad Eidi, Gaoussou Sanou, Guilhem Zeitoun, Taciana Manso, Shamsa Batool, Anjana Kushwaha, François Grand, Myriam Croze, Axel Vaillant, Chahrazed Debbagh, et al. (2026). IMGT® at scale: FAIR, dynamic, and automated tools for immune locus analysis . Nucleic Acids Research.

Milad Eidi, Mohsen Yari, Mohammad-Amin Omrani, Zahra Fazeli, Mohammad Rahmanian, Soudeh Ghafouri-Fard (2025). Comprehensive identification of hub mRNAs and lncRNAs in colorectal cancer using galaxy: an in silico transcriptome analysis . Discover Oncology.

Eidi, M., Abdolalizadeh, S., Moeini, S., Garshasbi, M., Zahiri, J.(2024). 123VCF: an intuitive and efficient tool for filtering VCF files . BMC Bioinformatics. 25. (1).

Milad Eidi, Mehrdad Mohammadi, Mahmood Saffari, Seyed Davar Siadat, Seyed Hossein Hejazi, Mohammad Shayestehpour, Mitra Motallebi(2023). Isolation, characterization, therapeutic potency, and genomic analysis of a novel bacteriophage vB_KshKPC-M against carbapenemase-producing Klebsiella pneumoniae strains (CRKP) isolated from Ventilator-associated pneumoniae (VAP) infection of COVID-19 patients . Annals of Clinical Microbiology and Antimicrobials. 22. (1). Springer Science and Business Media {LLC}

Mohammadi, M., Saffari, M., Siadat, S.D., Hejazi, S.H., Shayestehpour, M., Motallebi, M., Eidi, M.(2023). Isolation, characterization, therapeutic potency, and genomic analysis of a novel bacteriophage vB_KshKPC-M against carbapenemase-producing Klebsiella pneumoniae strains (CRKP) isolated from Ventilator-associated pneumoniae (VAP) infection of COVID-19 patients . Annals of Clinical Microbiology and Antimicrobials. 22. (1).

Milad Eidi (2020). Novel neuroclinical findings of autosomal recessive primary microcephaly 15 in a consanguineous Iranian family . European Journal of Medical Genetics.

Milad Eidi (2020). Identification of RELN variant p.(Ser2486Gly) in an Iranian family with ankylosing spondylitis; the first association of RELN and AS . European Journal of Human Genetics.

Garshasbi, M., Mahmoudi, M., Razmara, E., Vojdanian, M., Aslani, S., Farhadi, E., Jensen, L.R., Arzaghi, S.M., Poursani, S., Bitaraf, A., et al.(2020). Identification of RELN variant p.(Ser2486Gly) in an Iranian family with ankylosing spondylitis; the first association of RELN and AS . European Journal of Human Genetics. 28. (6). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 754-762.

Razmara, E., Azimi, H., Tavasoli, A.R., Fallahi, E., Sheida, S.V., Eidi, M., Bitaraf, A., Farjami, Z., Daneshmand, M.A., Garshasbi, M.(2020). Novel neuroclinical findings of autosomal recessive primary microcephaly 15 in a consanguineous Iranian family . European Journal of Medical Genetics. 63. (12).

Milad Eidi (2019). A novel ISCA2 variant responsible for an early-onset neurodegenerative mitochondrial disorder: a case report of multiple mitochondrial dysfunctions syndrome 4 . BMC Neurology.

Eidi, M., Garshasbi, M.(2019). A novel ISCA2 variant responsible for an early-onset neurodegenerative mitochondrial disorder: A case report of multiple mitochondrial dysfunctions syndrome 4 . BMC Neurology. 19. (1).

PREPRINT

Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nasirpour, Javad Zahiri, Masoud Garshasbi (2024). 123FASTQ: an intuitive and efficient tool for preprocessing Illumina FASTQ reads .

Samaneh Abdolalizadeh, Mohammad Hossein Nasirpour, Javad Zahiri, Masoud Garshasbi, Milad Eidi (2024). 123FASTQ: an intuitive and efficient tool for preprocessing Illumina FASTQ reads .