プロフィール詳細

プロジェクトを作成

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Naghmeh R.に依頼

United States

Bioinformatics Consultant | RNA-seq, Single-Cell & Spatial Transcriptomics Analysis, Multi-Omics Analysis,NGS Analysis

プロフィール概要

I am a Computational Biologist and Bioinformatics Consultant with expertise in RNA-seq, single-cell RNA-seq, spatial transcriptomics, multi-omics integration, biomarker discovery, and scientific data analysis. I have over 10 years of research experience spanning genomics, transcriptomics, microbiology, immunology, cancer biology, liver disease, and translational research. I help academic researchers, biotechnology companies, and healthcare organizations analyze complex biological datasets and translate them into meaningful scientific insights. My services include bulk RNA-seq analysis, single-cell and spatial transcriptomics analysis, differential expression analysis, pathway enrichment, cell-type deconvolution, biomarker discovery, survival analysis, machine learning applications, data visualization, and development of reproducible bioinformatics workflows. I am highly experienced with R and Python and routinely work with tools such as Seurat, Scanpy, Bioconductor packages, Cell Ranger, BayesPrism, and custom analytical pipelines. I also provide support for GEO submissions, metadata curation, manuscript preparation, figure generation, statistical analysis, and publication-ready visualizations. In addition to computational expertise, I have extensive laboratory experience in molecular biology, cell biology, CRISPR-based approaches, qRT-PCR, Western blotting, flow cytometry, and advanced imaging technologies. This combined computational and experimental background enables me to effectively interpret biological results and collaborate with multidisciplinary research teams. Recent projects have included single-cell and spatial transcriptomics analyses, RNA-seq biomarker discovery studies, liver disease and fibrosis research, multi-omics integration, development of interactive R Shiny dashboards, and implementation of scalable bioinformatics workflows on high-performance computing environments. Whether you need a complete bioinformatics analysis, assistance with a publication, statistical support, or consultation on study design and data interpretation, I can provide reliable, reproducible, and scientifically rigorous solutions tailored to your project goals.

専門分野

• ☆ Computational Biology
• ☆ Evolutionary Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Industrial Microbiology
• ☆ Microbiological Assays
• ☆ Biostatistics
• ☆ Mathematical Biology
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Microarrays
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Lipidomics
• ☆ Proteomics
• ☆ Metabolomics
• ☆ Genomics
• ☆ Molecular Evolution
• ☆ Chromatin
• ☆ Epigenetics
• ☆ PCR
• ☆ Molecular Cloning
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ DNA Sequencing
• ☆ Synthetic Genomics
• ☆ Protein Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Microinjection
• ☆ Mutagenesis
• ☆ Exome Sequencing
• ☆ Recombinant DNA
• ☆ RNA Synthesis
• ☆ RNA Sequencing
• ☆ DNA/Gene Synthesis
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ DNA Damage & Repair
• ☆ ChIP-Seq
• ☆ Kinases
• ☆ Monoclonal Antibody Production
• ☆ Molecular Ecology
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Cell Signaling Pathways
• ☆ Membrane Biology
• ☆ Gene Regulation
• ☆ Stem Cell Research
• ☆ Neuroscience
• ☆ Computational Neuroscience
• ☆ Biotechnology & Bioengineering
• ☆ Recombinant Protein Expression
• ☆ Data Collection
• ☆ Pathogenesis
• ☆ Clinical Microbiology
• ☆ Cell Culture
• ☆ Primary Cells
• ☆ Cell Line Engineering
• ☆ Large Scale Cell Culture
• ☆ Blotting
• ☆ Immunohistochemistry
• ☆ Phylogenetics
• ☆ Population Genetics
• ☆ Cytometry
• ☆ Cell Aging
• ☆ Information Retrieval
• ☆ Python
• ☆ SQL
• ☆ Excel
• ☆ SAS
• ☆ R

サービス

• Writing
• Research
• Data & AI

Writing Clinical Trial Documentation, Medical Writing

Research Meta-Research

Data & AI Statistical Analysis, Image Analysis

職務経験

Bioinformaticians

Sanford Burnham Prebys Medical Discovery Institute

5月 2025 - 現在

Bioinformatician

Sanford Burnham Prebys Medical Discovery Institute

4月 2025 - 現在

Bioinformationist

The Scripps Research Institute

2月 2024 - 5月 2025

Research Associate II

Hilman cancer center

1月 2023 - 1月 2024

学歴

Master of science in data analytics

Alliant International University

1月 2024 - 5月 2025

Medical microbiology

Tabriz University of Medical Sciences

8月 2016 - 12月 2019

認定資格

• Continuing Excellence Development Award

  Sanford Burnham Prebys research institute

  12月 2025 - 現在