プロフィール詳細

プロジェクトを作成

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Océane C.に依頼

France

Freelance editor and data scientist | PhD in biostatistics and interpretable Machine Learning for genomics

プロフィール概要

I am a scientist with expertise in computational and systems biology. I received my PhD from the University of Montpellier, France, on the topic of plant Systems Biology and Gene Regulatory Network Inference. During my postdoc, I employed and developed statistical learning approaches with applications in human Regulatory Genomics. You can find more about my academic career and education in my resume (https://oceane-cassan.com/). I am now working full-time on the creation and the scientific steering of Ephyra Publishing and its academic journal Systems Aging, where I am an editor (https://ephyrapublishing.com/).

専門分野

• ☆ Statistics
• ☆ Bioinformatics
• ☆ Systems Biology
• ☆ Epistemology
• ☆ R
• ☆ Technical & Scientific Writing
• ☆ Manuscript & Journal Article Writing
• ☆ Science Communication

サービス

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing, General Proofreading & Editing

Research Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

職務経験

Editor

Ephyra Publishing

1月 2025 - 現在

Postdoc

LIRMM

1月 2023 - 12月 2024

Invited Teaching Assistant

University of Montpellier

1月 2019 - 8月 2024

P.h.D : Statistical inference of regulatory networks in Arabidopsis under climate change

IPSiM

10月 2019 - 12月 2022

学歴

MASTER (Informatique - Intelligence artificielle)

Université Claude Bernard Lyon 1

- 現在

Engineering degree (Bioinformatics and modelling)

Institut National des Sciences Appliquées de Lyon

- 現在

認定資格

• 認定資格の詳細は未入力です。

出版物

PREPRINT

Océane Cassan, Julien Raynal, Christophe Vroland, Kayoko Yasuzawa, Tsukasa Kouno, Jen-Chien Chang, Chung-Chau Hon, Jay W. Shin, Masaki Kato, Hazuki Takahashi, et al. (2025). A genome-wide, machine learning-guided exploration of the cis-regulatory code involved in neuronal differentiation .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2024). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2024). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2023). Natural genetic variation underlying the negative effect of elevated CO2 on ionome composition in Arabidopsis thaliana .

Océane Cassan, Charles-Henri Lecellier, Antoine Martin, Laurent Bréhélin, Sophie Lèbre (2023). Optimizing data integration improves Gene Regulatory Network inference in Arabidopsis thaliana .

Océane Cassan, Léa-Lou Pimparé, Timothy Mozzanino, Cécile Fizames, Sébastien Devidal, Fabrice Roux, Alexandru Milcu, Sophie Lèbre, Alain Gojon, Antoine Martin (2023). Natural genetic variation underlying the negative effect of elevated CO2on ionome composition inArabidopsis thaliana .

JOURNAL ARTICLE

Océane Cassan, Adrien Jarretier-Yuste (2025). An inaugural editorial for Systems Aging . Systems Aging.

Océane Cassan, Charles-Henri Lecellier, Antoine Martin, Laurent Bréhélin, Sophie Lèbre, Inanc Birol (2024). Optimizing data integration improves gene regulatory network inference in Arabidopsis thaliana . Bioinformatics.

Océane Cassan, Léa‐Lou Pimparé, Christian Dubos, Alain Gojon, Liên Bach, Sophie Lèbre, Antoine Martin (2023). A gene regulatory network in Arabidopsis roots reveals features and regulators of the plant response to elevated CO2 . New Phytologist.

David Séré, Océane Cassan, Fanny Bellegarde, Cécile Fizames, Jossia Boucherez, Geoffrey Schivre, Jacinthe Azevedo, Thierry Lagrange, Alain Gojon, Antoine Martin, et al. (2022). Loss of Polycomb proteins CLF and LHP1 leads to excessive RNA degradation in Arabidopsis . Journal of Experimental Botany.

Oc{\'{e}}ane Cassan and Sophie L{\`{e}}bre and Antoine Martin(2021). Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite . BMC Genomics. 22. (1). Springer Science and Business Media {LLC}

Océane Cassan, Sophie Lèbre, Antoine Martin (2021). Inferring and analyzing gene regulatory networks from multi-factorial expression data: a complete and interactive suite . BMC Genomics.

(2019). Probing transcription factor combinatorics in different promoter classes and in enhancers . BMC Genomics.