プロフィール詳細

プロジェクトを作成

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Olivier N.に依頼

Switzerland

Expert in Bioinformatics & Genomic Data Analysis | PhD in Human Genomics | AI & Precision Medicine

プロフィール概要

I am a bioinformatics expert with a PhD in Genomics and extensive experience in genomic data analysis, algorithm development, and precision medicine applications. My expertise spans polygenic risk scores (PRS), pharmacogenomics (PGx), whole exome sequencing (WES), and whole genome sequencing (WGS) analysis. With a background in computational genomics and software development, I specialize in building robust bioinformatics pipelines, integrating AI-driven analytics, and translating genomic insights into actionable clinical recommendations. I have led bioinformatics teams in industry, developed novel statistical methods for complex trait analysis, and collaborated on cutting-edge research in genomics and cardiovascular risk prediction.

専門分野

• ☆ Biostatistics
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Genomics
• ☆ RNA Sequencing
• ☆ Python
• ☆ SQL
• ☆ Tensorflow
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Drug Discovery
• ☆ High Throughput Screening (HTS)
• ☆ Phenotypic Assays
• ☆ High Content Screening/Imaging
• ☆ Drug Development
• ☆ Preclinical Research
• ☆ Pharmacogenomics
• ☆ Preventive Medicine
• ☆ Precision Medicine

サービス

• Research
• Consulting
• Data & AI

Research Scientific and Technical Research, Systematic Literature Review

Consulting Operations Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Processing, Image Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

職務経験

Entrepreneur in Personalized Medicine

In collaboration with the Centre Hospi- talier Universitaire Vaudois (CHUV)

1月 2025 - 現在

Senior Lead BIoinformatician

Doppl SA

1月 2022 - 9月 2024

Post Doctoral Reseearcher

École Polytechnique Fédérale de Lausanne

4月 2021 - 12月 2021

学歴

Doctoral Assistant

École Polytechnique Fédérale de Lausanne

1月 2017 - 4月 2021

Visiting Researcher

Stanford

7月 2019 - 12月 2019

認定資格

• Business Creation Biotech

  Innosuisse Entrepreneurship Training

  10月 2024 - 現在

出版物

PREPRINT

Olivier Naret, Yuval Simons, Jacques Fellay, Jonathan K Pritchard (2024). Is competition for cellular resources a driver of complex trait heritability? .

Olivier Naret, Zhi Ming Xu, Jacques Fellay (2023). G2GSnake: A Snakemake workflow for host-pathogen genomic association studies .

Olivier Naret, David AA Baranger, Sharada Prasanna Mohanty, Bastian Greshake Tzovaras, Marcel Salathé, Jacques Fellay (2020). Phenotype prediction from genome-wide genotyping data: a crowdsourcing experiment .

Olivier Naret, Nimisha Chaturvedi, Istvan Bartha, Christian Hammer, Jacques Fellay (2017). Correcting for population stratification reduces false positive and false negative results in joint analyses of host and pathogen genomes .

JOURNAL ARTICLE

Olivier Naret, Clara Savary, Léa Luciana, Paul Huchedé, Arthur Tourbez, Claire Coquet, Maëlle Broustal, Alejandro Lopez Gonzalez, Clémence Deligne, Thomas Diot, et al. (2023). Fusion-negative rhabdomyosarcoma 3D organoids to predict effective drug combinations: A proof-of-concept on cell death inducers . Cell Reports Medicine.

Hodel F, Naret O, Bonnet C, Brenner N, Bender N, Tim Waterboer, Marques-Vidal P, Peter Vollenweider, Jacques Fellay (2022). The combined impact of persistent infections and human genetic variation on C-reactive protein levels . BMC medicine.

Naret O, Zoltán Kutalik, Hodel F, Xu ZM, Marques-Vidal P, Jacques Fellay (2022). Improving polygenic prediction with genetically inferred ancestry . HGG advances.

Olivier Naret, Nimisha Chaturvedi, Istvan Bartha, Christian Hammer, Jacques Fellay, The Swiss HIV Cohort Study (SHCS) (2018). Correcting for Population Stratification Reduces False Positive and False Negative Results in Joint Analyses of Host and Pathogen Genomes . Frontiers in Genetics.

CONFERENCE PAPER

Naret, O., Fellay, J.(2020). Using reference-fixed principal components to improve polygenic risk score prediction . European Journal Of Human Genetics. 28. (SUPPL 1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 134–135. SPRINGERNATURE