プロフィール詳細

プロジェクトを作成

★★★★★

☆☆☆☆☆

★★★★★

☆☆☆☆☆

Dr. Pascal L.に依頼

France

Freelance bioinformatician and data scientist | Expert in R

プロフィール概要

8 years of experience in academic research: two post-docs in the field of developmental biology and genomics. 21 publications I have strong skills in transcriptomics (RNAseq, ChIPseq, DGE), genomics, annotation, assembly, phylogeny. I am also specialized in statistics, data mining and machine learning. My favorite programming language is R, but I also use SQL, python.

専門分野

• ★ Genomics
• ☆ Developmental Biology
• ☆ Evolutionary Biology
• ☆ Biostatistics
• ☆ Transcriptomics
• ☆ Cell Biology
• ☆ Machine Learning

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing

Research Feasibility Study, Gray Literature Search, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting

Data & AI Statistical Analysis, Algorithm Design-Non ML, Data Visualization

Product Development Formulation

職務経験

Post-doc

CNRS, AFMB, Aix-Marseille Université

9月 2016 - 2月 2019

Post-doc

CNRS, LBDV, Villefranche-sur-mer

6月 2010 - 9月 2015

Bioinformatician

Centre Scientifique de Monaco, Monaco

7月 2013 - 8月 2013

学歴

PhD

Aix-Marseille 2

9月 2006 - 6月 2010

Magistère de Biologie Moléculaire et Cellulaire

Ecole Normale Supérieure de Lyon (ENS Lyon)

9月 2002 - 9月 2006

Agrégation

Ecole Normale Supérieure de Lyon (ENS Lyon)

9月 2005 - 6月 2006

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Artigas, G.Q., Lapébie, P., Leclère, L., Bauknecht, P., Uveira, J., Chevalier, S., Jékely, G., Momose, T., Houliston, E.(2020). A G protein-coupled receptor mediates neuropeptide-induced oocyte maturation in the jellyfish Clytia . PLoS Biology. 18. (3).

Lapébie, P., Lombard, V., Drula, E., Terrapon, N., Henrissat, B.(2019). Bacteroidetes use thousands of enzyme combinations to break down glycans . Nature Communications. 10. (1).

Leclère, L., Horin, C., Chevalier, S., Lapébie, P., Dru, P., Peron, S., Jager, M., Condamine, T., Pottin, K., Romano, S., et al.(2019). The genome of the jellyfish Clytia hemisphaerica and the evolution of the cnidarian life-cycle . Nature Ecology and Evolution. 3. (5). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 801-810.

Quiroga Artigas, G., Lapébie, P., Leclère, L., Takeda, N., Deguchi, R., Jékely, G., Momose, T., Houliston, E.(2018). A gonad-expressed opsin mediates light-induced spawning in the jellyfish clytia . eLife. 7.

Terrapon, N., Lombard, V., Drula, É., Lapébie, P., Al-Masaudi, S., Gilbert, H.J., Henrissat, B.(2018). PULDB: The expanded database of Polysaccharide Utilization Loci . Nucleic Acids Research. 46. (D1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString D677-D683.

Seshadri, R., Leahy, S.C., Attwood, G.T., Teh, K.H., Lambie, S.C., Cookson, A.L., Eloe-Fadrosh, E.A., Pavlopoulos, G.A., Hadjithomas, M., Varghese, N.J., et al.(2018). Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection . Nature Biotechnology. 36. (4). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 359-367.

Takeda, N., Kon, Y., Artigas, G.Q., Lapébie, P., Barreau, C., Koizumi, O., Kishimoto, T., Tachibana, K., Houliston, E., Deguchi, R.(2018). Identification of jellyfish neuropeptides that act directly as oocyte maturation-inducing hormones . Development (Cambridge). 145. (2).

Wong, M.T., Wang, W., Couturier, M., Razeq, F.M., Lombard, V., Lapebie, P., Edwards, E.A., Terrapon, N., Henrissat, B., Master, E.R.(2017). Comparative metagenomics of cellulose- and poplar hydrolysate-degrading microcosms from gut microflora of the Canadian Beaver (Castor canadensis) and North American moose (Alces americanus) after long-term enrichment . Frontiers in Microbiology. 8. (DEC).

Simion, P., Philippe, H., Baurain, D., Jager, M., Richter, D.J., Di Franco, A., Roure, B., Satoh, N., Quéinnec, É., Ereskovsky, A., et al.(2017). A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals . Current Biology. 27. (7). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 958-967.

Ricci, L., Chaurasia, A., Lapébie, P., Dru, P., Helm, R.R., Copley, R.R., Tiozzo, S.(2016). Identification of differentially expressed genes from multipotent epithelia at the onset of an asexual development . Scientific Reports. 6.

Ereskovsky, A.V., Borisenko, I.E., Lapébie, P., Gazave, E., Tokina, D.B., Borchiellini, C., Singh, S.R.(2015). Oscarella lobularis (Homoscleromorpha, Porifera) Regeneration: Epithelial morphogenesis and metaplasia . PLoS ONE. 10. (8).

Lapébie, P., Ruggiero, A., Barreau, C., Chevalier, S., Chang, P., Dru, P., Houliston, E., Momose, T.(2014). Differential Responses to Wnt and PCP Disruption Predict Expression and Developmental Function of Conserved and Novel Genes in a Cnidarian . PLoS Genetics. 10. (9).

Ereskovsky, A.V., Dubois, M., Ivanišević, J., Gazave, E., Lapebie, P., Tokina, D., Pérez, T.(2013). Pluri-annual study of the reproduction of two Mediterranean Oscarella species (Porifera, Homoscleromorpha): Cycle, sex-ratio, reproductive effort and phenology . Marine Biology. 160. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 423-438.

Gazave, E., Lapébie, P., Ereskovsky, A.V., Vacelet, J., Renard, E., Cárdenas, P., Borchiellini, C.(2012). No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera . Hydrobiologia. 687. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 3-10.

Lapébie, P., Borchiellini, C., Houliston, E.(2011). Dissecting the PCP pathway: One or more pathways?: Does a separate Wnt-Fz-Rho pathway drive morphogenesis? . BioEssays. 33. (10). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 759-768.

Gazave, E., Lapébie, P., Renard, E., Vacelet, J., Rocher, C., Ereskovsky, A.V., Lavrov, D.V., Borchiellini, C.(2010). Molecular phylogeny restores the supra-generic subdivision of homoscleromorph sponges (Porifera, Homoscleromorpha) . PLoS ONE. 5. (12).

Gazave, E., Lapébie, P., Richards, G.S., Brunet, F., Ereskovsky, A.V., Degnan, B.M., Borchiellini, C., Vervoort, M., Renard, E.(2009). Origin and evolution of the Notch signalling pathway: An overview from eukaryotic genomes . BMC Evolutionary Biology. 9. (1).

Lapébie, P., Gazave, E., Ereskovsky, A., Derelle, R., Bézac, C., Renard, E., Houliston, E., Borchiellini, C.(2009). WNT/β-catenin signalling and epithelial patterning in the homoscleromorph sponge Oscarella . PLoS ONE. 4. (6).

Ereskovsky, A.V., Borchiellini, C., Gazave, E., Ivanisevic, J., Lapébie, P., Perez, T., Renard, E., Vacelet, J.(2009). The Homoscleromorph sponge Oscarella lobularis, a promising sponge model in evolutionary and developmental biology: Model sponge oscarella lobularis . BioEssays. 31. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 89-97.

Renard, E., Vacelet, J., Gazave, E., Lapébie, P., Borchiellini, C., Ereskovsky, A.V.(2009). Origin of the neuro-sensory system: new and expected insights from sponges . Integrative zoology. 4. (3). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 294-308.

Gazave, E., Lapébie, P., Renard, E., Bézac, C., Boury-Esnault, N., Vacelet, J., Pérez, T., Manuel, M., Borchiellini, C.(2008). NK homeobox genes with choanocyte-specific expression in homoscleromorph sponges . Development Genes and Evolution. 218. (9). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 479-489.