プロフィール詳細

プロジェクトを作成

★★★★★

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☆☆☆☆☆

Radmir S.に依頼

Kazakhstan

PhD-Level ML & Bioinformatics Expert | MD | 13 Yrs Bridging Molecular Biology, Clinical Research, and Data Science

プロフィール概要

I am a medical doctor with 13 years of cross-disciplinary experience (surgery, molecular biology, bioinformatics, and machine learning). After beginning my career as a general surgeon, I transitioned into academic research with a focus on long non-coding RNAs, transcriptomics, and systems biology. Over time, my work evolved into computational biomedicine, where I now specialize in applying machine learning and data science to clinical datasets, high-throughput omics data, and diagnostic modeling. My ongoing projects include the development of predictive models for epilepsy treatment outcomes, bacterial resistance profiling using NGS and MALDI-TOF data, and machine learning-driven approaches for biomarker discovery in cancer and autoimmune diseases. I also contribute to systematic reviews and meta-analyses in infectious disease and antibiotic resistance. I am actively involved in interdisciplinary teaching and curriculum development, and I collaborate with local and international research groups on projects that bridge clinical insights with computational methods. I have experience with Python, and Bash-based bioinformatics pipelines, and I am comfortable working with tools like MetaPhlAn, Bowtie2, FastQC / fastp, iqtree2, scikit-learn, and others. Whether you’re looking for help with experimental design, data interpretation, manuscript writing, or AI model development in life sciences, I bring both clinical understanding and computational rigor to every project.

専門分野

• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Microbiological Assays
• ☆ Biostatistics
• ☆ Biochemistry
• ☆ Immunoassay
• ☆ Molecular Biology
• ☆ Genetics
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Proteomics
• ☆ Genomics
• ☆ Molecular Evolution
• ☆ Epigenetics
• ☆ PCR
• ☆ Molecular Cloning
• ☆ Next Generation Sequencing (NGS)
• ☆ ATAC-Seq
• ☆ DNA Sequencing
• ☆ Gene Expression Analysis
• ☆ Genome Sequencing
• ☆ Recombinant DNA
• ☆ RNA Synthesis
• ☆ RNA Sequencing
• ☆ Oligonucleotide Synthesis
• ☆ Plasmid DNA
• ☆ Cell Biology
• ☆ Cell-Based Assays
• ☆ Cytochemistry
• ☆ Cytogenetics
• ☆ Cell Signaling Pathways
• ☆ Gene Regulation
• ☆ Stem Cell Research
• ☆ Microscopy
• ☆ Light Microscopy
• ☆ Fluorescence Microscopy
• ☆ Data Analysis
• ☆ Image Processing
• ☆ Predictive Modeling & Analytics
• ☆ Data Processing
• ☆ Cluster Analysis
• ☆ Data Visualization
• ☆ Big Data Analytics
• ☆ Data Collection
• ☆ Machine Learning
• ☆ Natural Language Processing
• ☆ Neural Networks
• ☆ Artificial Intelligence
• ☆ Deep Learning
• ☆ Statistics
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Pathogenesis
• ☆ Clinical Microbiology
• ☆ Cell Culture
• ☆ Primary Cells
• ☆ Taxonomy/Classification
• ☆ Blotting
• ☆ Immunohistochemistry
• ☆ Phylogenetics
• ☆ Population Genetics
• ☆ Data Storage
• ☆ Telecommunications
• ☆ Internet
• ☆ Higher Education
• ☆ Science Education
• ☆ Python
• ☆ Matlab
• ☆ Excel
• ☆ LaTex
• ☆ Tableau
• ☆ Scikit-learn
• ☆ Markup Languages
• ☆ Clinical Trials
• ☆ Clinical Data Management
• ☆ Dermatology
• ☆ Skin Cancer
• ☆ Human Biology
• ☆ Oncology
• ☆ Surgical Oncology
• ☆ Precision Medicine
• ☆ General Surgery
• ☆ Infectious Disease
• ☆ Antibiotic Resistance Research
• ☆ Medical Education
• ☆ Continuing Medical Education (CME)
• ☆ Trauma Surgery
• ☆ Cancer Research
• ☆ Cancer Biology
• ☆ Carcinogenesis

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Medical Writing

Research Scientific and Technical Research, Systematic Literature Review

Consulting Healthcare Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Analysis, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Concept Development

職務経験

Researcher ML

Nazarbayev University

7月 2022 - 現在

Instructor

Nazarbayev University

8月 2020 - 現在

Course Instructor in the Dept of Biology

Nazarbayev University

10月 2019 - 現在

Teaching Assistant

Nazarbayev University

10月 2019 - 7月 2020

Research Assistant

University of Sheffield

9月 2016 - 12月 2016

Research Assistant - Research Associate

SRSF, University of Sheffiled

9月 2015 - 12月 2016

General Surgeon

Astana Medical University

9月 2012 - 6月 2014

Instructor

Astana Medical University

9月 2012 - 7月 2013

Course Instructor in the Dept of Human Body Anatomy

Astana Medical University

9月 2012 - 6月 2013

学歴

Master of Science in Molecular Biology (Institute of Clinical Research of Montreal)

University of Montreal

9月 2017 - 3月 2019

Master of Science in Biomedicine (Sheffield RNAi Screening Facility)

University of Sheffield

9月 2015 - 9月 2016

Medical Degree (MD)

Astana Medical University

9月 2012 - 6月 2014

MBBS (General Medicine)

Astana Medical University

9月 2007 - 7月 2012

認定資格

• Introduction to Data Science in Python

  University of Michigan - Coursera

  https://coursera.org/verify/NTU5ZAXU5SEC

  7月 2020 - 現在

• Machine Learning with Python

  IBM - Coursera

  https://coursera.org/verify/8SLK5B92AH7C

  7月 2020 - 現在

• Python 3 programming

  University of Michigan - Coursera

  https://coursera.org/verify/specialization/EV2V8Z675S28

  5月 2020 - 現在

• Python Project: Software Engineering and Image Manipulation

  University of Michigan - Coursera

  https://coursera.org/verify/3Q38DKZ4344A

  5月 2020 - 現在

• Python Functions, Files, and Dictionaries

  University of Michigan - Coursera

  https://coursera.org/verify/BR4GBJZ6SPZ8

  4月 2020 - 現在

• Python Classes and Inheritance

  University of Michigan - Coursera

  https://coursera.org/verify/AAQXTLTLYANJ

  4月 2020 - 現在

• Data Collection and Processing with Python

  University of Michigan - Coursera

  https://coursera.org/verify/4JZGTZTUKBWG

  4月 2020 - 現在

• Using Databases with Python

  University of Michigan - Coursera

  https://coursera.org/verify/KCPPXXEHZ4RA

  3月 2020 - 現在

• Using Python to Access Web Data

  University of Michigan - Coursera

  https://coursera.org/verify/TNUG8CVY9QS2

  2月 2020 - 現在

• Python Data Structures

  University of Michigan - Coursera

  https://coursera.org/verify/NUUNV8KMF5G6

  2月 2020 - 現在

• Introduction to Artificial Intelligence

  IBM - Coursera

  https://coursera.org/verify/V6FRZ3KUC3RF

  2月 2020 - 現在

• Network Analysis in Systems Biology

  Icahn School of Medicine at Mount Sinai - Coursera

  https://www.coursera.org/verify/XR2B9HXA9B

  3月 2015 - 現在

• Experimental Methods in Systems Biology

  Icahn School of Medicine at Mount Sinai - Coursera

  https://www.coursera.org/verify/K8BU9542PU

  1月 2015 - 現在

出版物

JOURNAL ARTICLE

Radmir Sarsenov, Dmitriy Babenko, Dinara Kamalova, Asylulan Amirgazin, Rosaliya Begaidarova, Saule Atshabarova, Alexandr Shevtsov, Yekaterina Sidelyova, Sergey Yegorov, Irina Kadyrova (2025). Complete genome sequence of a human influenza a virus (H1N1) detected in Kazakhstan in the fall of 2022 . Microbiology Resource Announcements.

Radmir Sarsenov, Antonio Sarria-Santamera, Nurly Kapashova, Kymbat Mukhtarova, Aigerim Sipenova, Milan Terzic, Gauri Bapayeva, Asselzhan Sarbalina, Saule Zhumambayeva, Kamalzhan Nadyrov, et al. (2024). Characterization of COVID-19 infected pregnant women with ICU admission and the risk of preterm: A cluster analysis . Journal of Infection and Public Health.

Radmir Sarsenov, Kevin Walters, Wen Siong Too, Roseanna K. Hare, Ian C. Paterson, Daniel W. Lambert, Stephen Brown, James Bradford (2019). Comprehensive functional profiling of long non-coding RNAs through a novel pan-cancer integration approach and modular analysis of their protein-coding gene association networks . BMC Genomics.