プロフィール詳細

プロジェクトを作成

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Dr. Rashedul I.に依頼

Canada

Bioinformatics PhD with 12+ years of experience across academia and industry for large-scale genomic data analysis.

プロフィール概要

Innovative and highly skilled bioinformatics professional with over a decade of experience in leading the development of computational methods and the analysis of large-scale genomic and epigenomic datasets from cancer patients. I developed efficient bioinformatics and AI/ML pipelines to study diverse NGS assays such as whole genome shotgun, RNA-seq, single-cell RNAseq, ChIP-seq, Bisulfite-seq, ATAC-seq, metagenomic data etc. Those projects brought out key biological insights, and subsequent findings were published in peer-reviewed scientific journals. Examples of bioinformatics pipelines available on GitHub include CRIS (2021), VirusTaxo (2022), and diffER (2024); and the reproducible code from my recent project. My research interests focus on two aspects 1) developing bioinformatics methods and predictive models for efficient data analysis, and 2) conducting systematic analysis of the multi-omic data to discern intricate mechanisms in human health and diseases. With extensive hands-on experience in wrangling, analyzing, and visualizing biomedical data, version control, and working on Linux-based highperformance computing, I excel at bridging the gap between raw data and insights. I am adept at working with geographically diverse teams, leading cross-functional teams, mentoring junior scientists, and collaborating with clinicians and scientists to translate research findings into actionable outcomes. I possess strong technical proficiency in bioinformatics tools, programming languages (Python, R Bash, Nextflow), and data visualization, with a demonstrated ability to communicate complex data to diverse audiences.

専門分野

• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Microbiological Assays
• ☆ Molecular Biology
• ☆ Omics
• ☆ Genomics
• ☆ Epigenetics
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Genome Sequencing
• ☆ Exome Sequencing
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Cancer Research
• ☆ Cancer Biology

サービス

• Writing
• Research
• Consulting
• Data & AI
• Product Development

Writing Technical Writing

Research Meta-Research, Feasibility Study, Fact Checking, Gap Analysis, Gray Literature Search, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Scientific and Technical Consulting, Manufacturing Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Processing, Image Analysis, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Text Mining & Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

Product Development Formulation, Product Validation, Quality Assurance & Control (QA/QC)

職務経験

Bioinformatics lead

Genofax Life Sciences

7月 2022 - 現在

学歴

PhD (Bioinformatics)

University of British Columbia

- 現在

認定資格

• NA

  NA

  https://scholar.google.ca/citations?user=HeAEzIkAAAAJ&hl=en

  1月 2025 - 現在

出版物

PREPRINT

Rashedul Islam, Md. Enamul Hoque, Md. Shariful Islam, Arnab Sen Sharma, Mohammad Ruhul Amin(2021). Challenges in Tracking the Risk of COVID-19 in Bangladesh: Evaluation of A Novel Method . Cold Spring Harbor Laboratory

Rashedul Islam, Rajan Saha Raju, Abdullah Al Nahid, Preonath Shuvo (2021). VirusTaxo: Taxonomic classification of virus genome using multi-class hierarchical classification by k-mer enrichment .

Rashedul Islam, Rajan Saha Raju, Nazia Tasnim, Md. Istiak Hossain Shihab, Maruf Ahmed Bhuiyan, Yusha Araf, Tofazzal Islam(2020). Choice of assemblers has a critical impact on de novo assembly of SARS-CoV-2 genome and characterizing variants . Cold Spring Harbor Laboratory

JOURNAL ARTICLE

CRIS: complete reconstruction of immunoglobulin V-D-J sequences from RNA-seq data <head> <META HTTP-EQUIV="Refresh" CONTENT="0;URL=/servlet/useragent"> </head> . Bioinformatics Advances.