プロフィール詳細

プロジェクトを作成

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Rimshah S.に依頼

Pakistan

Freelance Bioinformatician | Microbiome Analysis · NGS Pipelines · Multi-omics · Machine Learning

プロフィール概要

I am a bioinformatician with an MSc in Bioinformatics (CGPA 4.48/5.00, National Research Tomsk State University, Russia) and three peer-reviewed publications, including a shared first-authored paper accepted in Genes & Genomics. My expertise spans microbiome analysis, metagenomics, multi-omics data integration, and machine learning applied to large-scale biological datasets. Current & Recent Projects: My most substantial project is a cross-ethnic meta-analysis of the salivary microbiome in oral squamous cell carcinoma (OSCC), integrating eight 16S rRNA sequencing datasets across 779 samples from seven global populations (Austria, China, Finland, India, New Zealand, Poland, Taiwan). I independently managed the complete bioinformatics pipeline — raw sequence processing in QIIME2, alpha/beta diversity analysis, differential abundance testing with ANCOM-BC2, multi-cohort batch correction using ConQuR, and cross-pipeline validation in R. A manuscript from this work is currently under review for journal submission. My MSc thesis investigated the effect of physical activity on the gut microbiome of child athletes using Oxford Nanopore Technology (V1–V9 16S rRNA) long-read sequencing, applying NanoASV, PRONAME, PICRUSt2, and Networkx for taxonomic, functional, and metabolic profiling, with the full dataset deposited to NCBI. Core Skills & Tools: Metagenomics & 16S rRNA analysis: QIIME2, DADA2, SILVA, deblur Differential abundance: ANCOM-BC2, DESeq2, Limma-voom Batch correction: ConQuR, ComBat Programming: R (phyloseq, vegan, ggplot2), Python, Bash Sequencing: Illumina short-read, Oxford Nanopore Technology (ONT) long-read Multi-omics integration, machine learning, microbial network analysis (Networkx) Wet lab: DNA/RNA extraction, PCR, GC-MS, HPLC Services I Offer: 16S rRNA microbiome analysis (QIIME2 pipeline, end-to-end) Shotgun metagenomics analysis Differential abundance testing and diversity analysis Multi-cohort data integration and batch correction R/Python bioinformatics scripting and visualisation Manuscript editing and scientific writing (biology/bioinformatics) NGS data analysis and pipeline development I work independently, deliver results on time, and communicate clearly throughout every project. I am available for short-term and long-term collaborations.

専門分野

• ☆ Computational Biology
• ☆ Microbiology
• ☆ Microbiome Research
• ☆ Data Collection
• ☆ Statistics
• ☆ Meta-Analysis
• ☆ Multivariate Analysis
• ☆ Bayesian Statistics
• ☆ Correlation Analysis
• ☆ Study Design
• ☆ Health Data Analysis
• ☆ Decision Science

サービス

• Writing
• Research
• Data & AI

Writing Medical Writing, Technical Writing

Research User Research, Meta-Research, Feasibility Study

Data & AI Statistical Analysis, Image Processing, Data Visualization

職務経験

Research assistant 2

Precision Medicine Lab

3月 2026 - 6月 2026

Junior Scientist

National Research Tomsk State University

4月 2025 - 10月 2025

Specialist

National Research Tomsk State University

5月 2024 - 12月 2024

Research Affiliate

Precision Medicine Lab.

3月 2021 - 6月 2022

学歴

Master of Science in Bioinformatics ( Higher Engineering School of Agrobiotechnology.)

National Research Tomsk State University

10月 2023 - 10月 2025

Bachelor of Science in Biotechnology (Institute of integrative Biosciences )

CECOS University Of IT and Emerging Sciences

2014 - 2018

認定資格

• Datadanics competition, NLP- tweet sentiment analysis

  Codanics

  8月 2022 - 現在

出版物

JOURNAL ARTICLE

Ikkert, O. P., Shepilova, V. A., Bandurova, L. S., Sabir, R., & Kabachkova, A. V. (2025). Microbiotic ecological networks in children with different levels of motor activity. IEST Vestnik MPGU, 460, 100-117. https://doi.org/10.24412/2076-9091-2025-460-100-117 .

Rimshah Sabir(2025). Structural and Functional Reconstruction of Metabolic Modules of Intestinal Microbiota in Child Athletes . Opera Medica et Physiologica. Opera Medica et Physiologica