プロフィール詳細

プロジェクトを作成

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Sanam G.に依頼

Pakistan

Bioinformatician & Microbiologist | Targeted Resistome Mapping & High Throughput Sequencing Pipelines

プロフィール概要

I am an Islamabad based microbiologist specializing in computational genomics, biostatistics, and pipeline automation for infectious disease research. My work bridges the gap between traditional benchtop microbiology and high dimensional dry-lab analysis. Holding an MPhil in Microbiology from Quaid-i-Azam University, my academic and freelance research focuses heavily on tracking the genomic drivers of antimicrobial resistance (AMR), specifically within Escherichia coli pan genomes. I help research laboratories, biotechnology startups, and independent principal investigators transition from raw sequencing assets to publication-grade biological insights. Rather than relying on generic, rigid software wrappers, I write custom, reproducible code architectures tailored to the specific biological questions of each study. My core computational toolkit includes: • High-throughput transcriptomics pipelines (RNA-Seq data curation, translation efficiency modeling, and differential expression analysis). • Raw short-read sequence engineering (Automated quality control architectures, sliding-window adapter clipping, and de novo bacterial genome assembly evaluation using N50/L50 continuity metrics). • Statistical association mapping (Bacterial GWAS frameworks executing Chi Square engines to isolate causal point mutations against baseline evolutionary noise). • Machine learning diagnostics (Training parallelized Random Forest ensembles to accurately model complex genotype to phenotype resistance states). Whether you need to clean raw FASTQ files fresh from an Illumina run, map specific target-site mutations, or build robust predictive models for clinical surveillance registries, I deliver clean, open-source code scripts alongside journal ready data visualizations. I actively maintain open-source code architectures, automated pipelines, and full script documentation for my research models. You can review my functional code directly via my public portfolio repository at https://github.com/Sanam-amr Let's connect to accelerate your genomic data workflows.

専門分野

• ★ Computational Biology
• ★ Microbiology
• ★ Biostatistics
• ★ Gene Expression Analysis
• ☆ Microbiome Research
• ☆ Bacteriology
• ☆ Gram-Negative Bacteria
• ☆ Gram-Positive Bacteria
• ☆ Molecular Biology
• ☆ Biomarkers
• ☆ Genetics
• ☆ Next Generation Sequencing (NGS)
• ☆ DNA Sequencing
• ☆ Bioinformatics
• ☆ Pathogenesis
• ☆ Phylogenetics

サービス

• Consulting
• Data & AI

Consulting Healthcare Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Algorithm Design-ML, Data Visualization, Data Cleaning, Data Processing

職務経験

Freelance Bioinformatics & Genomic Data Specialist

Independent Scientific Consulting

7月 2024 - 現在

Research Trainee

Quaid-i-Azam University

2月 2021 - 6月 2023

学歴

MPhil in Medical Microbiology (Department of Microbiology Quaid-I-Azam University )

Quaid-i-Azam University

2月 2021 - 6月 2023

認定資格

• Research Writing in Bioinformatics

  Genomac Institute Inc.

  8月 2025 - 現在

• Applied Biomedical AI Certificate Course

  OIC Comstech and Ningbo University China

  7月 2025 - 1月 2026

出版物

DISSERTATION THESIS

Gohar, S. (2023). Antimicrobial resistance patterns in ESBL-producing Escherichia coli (MPhil thesis). Quaid-i-Azam University, Pakistan .