プロフィール詳細

プロジェクトを作成

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Dr. Shiva K.に依頼

United States

Bioinformatics & ML Specialist | Expert in scRNA-seq, spatial omics with R and Python

プロフィール概要

I am a PhD-level Computational Biologist with specialized expertise in single-cell analysis, spatial omics (CosMx, GeoMx), RNA-seq, and neurodegeneration biology. I have led multi-stage research projects involving QC, normalization, batch correction, differential expression, functional enrichment, trajectory analysis, eigengene modeling, and spatial microenvironment mapping. My skill set includes: 1. RNA-seq, scRNA-seq, snRNA-seq analysis 2. Spatial transcriptomics and proteomics (CosMx, GeoMx DSP, 10x) 3. Multi-omics integration (transcriptome + proteome) 4. ML/deep learning for biological data 5. Biomarker discovery and classification models 6.Scientific writing and figure creation I have worked on Alzheimer’s disease, senescence biology, inflammation, brain aging, oncology, and other complex biological systems. I deliver clean, reproducible, and publication-ready outputs, along with clear biological interpretation tailored to your project needs.

専門分野

• ☆ Data Analysis
• ☆ Deep Learning
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology

サービス

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing, General Proofreading & Editing

Research Meta-Research, Feasibility Study, Fact Checking, Scientific and Technical Research, Systematic Literature Review

Consulting Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Image Processing, Algorithm Design-Non ML, Algorithm Design-ML, Data Visualization, Big Data Analytics, Data Cleaning, Data Processing, Data Insights

職務経験

CEO, Co-founder

VirVa Health

5月 2025 - 現在

Visiting Scientist

The University of Texas Health Science Center at San Antonio

9月 2019 - 8月 2021

学歴

PhD in Integrated Biomedical Sciences (Structural biology)

The University of Texas Health Science Center at San Antonio

9月 2021 - 12月 2025

Biostatistics (Biomedical Sciences)

Tarbiat Modares University

9月 2017 - 6月 2019

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Mohsen Sharifitabar, Shiva Kazempour, Javad Razavian, Sogand Sajedi, Soroosh Solhjoo, Habil Zare (2025). ZiPo: A deep neural network to de-noise single-cell RNA sequencing data . IEEE Transactions on Computational Biology and Bioinformatics.

Shiva Kazempour Dehkordi, Mitzi M. Gonzales, Valentina R. Garbarino, Tiffany F. Kautz, Juan Pablo Palavicini, Marisa Lopez-Cruzan, Julia J. Mathews, Habil Zare, Peng Xu, Bin Zhang, et al. (2023). Senolytic therapy in mild Alzheimer’s disease: a phase 1 feasibility trial . Nature Medicine.

Shiva Kazempour Dehkordi, Jamie Walker, Eric Sah, Emma Bennett, Farzaneh Atrian, Bess Frost, Benjamin Woost, Rachel E. Bennett, Timothy C. Orr, Yingyue Zhou, et al. (2021). Profiling senescent cells in human brains reveals neurons with CDKN2D/p19 and tau neuropathology . Nature Aging.

PREPRINT

Mohsen Sharifitabar, Shiva Kazempour, Javad Razavian, Sogand Sajedi, Soroosh Solhjoo, Habil Zare (2024). A deep neural network to de-noise single-cell RNA sequencing data .

Shiva Kazempour Dehkordi, Paulino Ramirez, Wenyan Sun, Habil Zare, Giovanni Pascarella, Piero Carninci, Bernard Fongang, Kevin F. Bieniek, Bess Frost (2024). Nanopore Long-Read Sequencing Unveils Genomic Disruptions in Alzheimer’s Disease .

Shiva Kazempour Dehkordi, Miranda Orr, Mitzi Gonzales, Valentina Garbarino, Tiffany Kautz, Juan Palavicini, Marisa Lopez-Cruzan, Julia Mathews, Habil Zare, Peng Xu, et al. (2023). Senolytic therapy to modulate the progression of Alzheimer’s Disease (SToMP-AD) – Outcomes from the first clinical trial of senolytic therapy for Alzheimer's disease .