プロフィール詳細

プロジェクトを作成

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Dr. Dr Sree Sankar D.に依頼

India

Bioinformatics & Microbiome Scientist | Multi-omics Data Analysis Expert | 16S, WGS, scRNA-seq, Nanopore and PacBio

プロフィール概要

I am a Bioinformatics Scientist and Human Microbiome Researcher with a PhD in Bioinformatics and extensive expertise in multi-omics data analysis. I specialize in 16S/ITS sequencing, shotgun metagenomics, whole-genome sequencing, PacBio and Nanopore long-read analysis, single-cell RNA-seq, and methylation/epigenomic workflows. Currently, I serve as an Assistant Professor at Yenepoya (Deemed to be University), leading research projects, supervising students, and developing multi-omics analytical pipelines. Previously, I worked as a Project Scientist at the Centre for Cellular & Molecular Biology (CCMB) (2021–2022) and the Centre for Marine Living Resources and Ecology (CMLRE) (2022–2024), where I contributed to human, environmental, and marine microbiome projects. My technical skillset includes QIIME2, DADA2, Kraken2, HUMAnN3, MetaPhlAn, Cell Ranger, Seurat, Scanpy, MinKNOW/Guppy, Nanopolish, PacBio SMRT Link, genome assembly tools, QUAST, BUSCO, and advanced statistical analysis using R and Python. I offer consultancy services for: (i) 16S/ITS, WGS, shotgun metagenomics & long-read (PacBio/Nanopore) analysis (ii) Genome assembly, polishing, and annotation (iii) Single-cell RNA-seq QC, clustering, annotation (iv) Epigenomics & methylation data analysis (v) Multi-omics integration, visualization & reproducible pipelines (vi) Manuscript, grant, and technical report support I deliver publication-ready analyses, reproducible workflows, and actionable insights tailored to research, biotech, and clinical projects.

専門分野

• ★ Genomics
• ★ Bioinformatics
• ★ R
• ☆ Molecular Biology
• ☆ Omics
• ☆ Data Analysis
• ☆ Systems Biology

サービス

• Research

Research Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

職務経験

ASSISTANT PROFESSOR

Yenepya Deemed to be University

12月 2024 - 現在

Assistant Professor

Yenepoya University

12月 2024 - 現在

Project Scientist II

Center for Marine Living Resources and Ecology

11月 2022 - 10月 2024

Project Scientist

Centre for Marine Living Resources and Ecology

11月 2022 - 10月 2024

Project Scientist

CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY, HYDERABAD

10月 2021 - 9月 2022

Project Scientist I

Centre for Cellular and Molecular Biology

10月 2021 - 9月 2022

Project Technician

Central Tuber Crops Research Institute

12月 2012 - 10月 2014

Technical Assistant

Central Tuber Crops Research Institute

12月 2012 - 1月 2014

Project trainee

University of Kerala

10月 2011 - 1月 2012

Project Assistant

Unversity of Kerala Department of Bioinformatics

12月 2010 - 6月 2011

学歴

PhD

University of Chinese Academy of Sciences

9月 2014 - 9月 2020

M.Sc. Bioinformatics

Kerala University

7月 2008 - 8月 2010

認定資格

• Accel IT academy CCNA and Hardware and networking

  Accel It academy

  8月 2011 - 現在

出版物

JOURNAL ARTICLE

Sree Sankar Darveekaran Nair, Pengfei Zhu, Yogendra Bhaskar, Fei Teng(2021). Influence of DNA extraction methods and 16S rRNA targeted hypervariable regions on microbial diversity profiling of dental plaque and saliva . ScienceAsia. 47. (5). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 567. Science Society of Thailand

Sree Sankar D, PhD(2020). Role of biochar and organic substrates in enhancing the functional characteristics and microbial community in a saline soil . Journal of Environmental Management. 269. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 110737. Elsevier {BV}

Fei Teng and Sree Sankar Darveekaran Nair and Pengfei Zhu and Shanshan Li and Shi Huang and Xiaolan Li and Jian Xu and Fang Yang(2018). Impact of DNA extraction method and targeted 16S-rRNA hypervariable region on oral microbiota profiling . Scientific Reports. 8. (1). Springer Science and Business Media {LLC}

Fei Teng, Sree Sankar Darveekaran Nair, Pengfei Zhu, Shanshan Li, Shi Huang, Xiaolan Li, Jian Xu, Fang Yang(2018). Impact of DNA extraction method and targeted 16S-rRNA hypervariable region on oral microbiota profiling . Scientific Reports. 8. (1). Springer Science and Business Media {LLC}

Sree Sankar D, PhD (2017). Life-table of Odoiporus longicollis Oliver (Coleoptera: Dryophthoridae) under varying temperature ranges, an in-vitro study. Entomon.

Vishnu Sukumari Nath and Vinayaka Mahabaleswar Hegde and Muthulekshmi Lajapathy Jeeva and Raj Shekar Misra and Syamala Swayamvaran Veena and Mithun Raj and Darveekaran Sree Sankar(2015). Morphological, pathological and molecular characterization of Phytophthora colocasiae responsible for taro leaf blight disease in India . Phytoparasitica. 43. (1). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 21--35. Springer Science and Business Media {LLC}

Vishnu Sukumari Nath and Moochatil Rajitha and Sree Sankar Darveekaran and Vinayaka Mahabaleswar Hegde and Muthulekshmi Lajapathy Jeeva and Raj Shekar Misra and Syamala Swayamvaran Veena and Neetha Soma John and Indira Parameswaran Anjanadevi and Mithun Raj(2015). Identification of Phytophthora colocasiae genes differentially expressed during infection on taro (Colocasia esculenta) . Physiological and Molecular Plant Pathology. 89. Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 78--86. Elsevier {BV}

Sree Sankar D, PhD (2015). Genetic diversity of Phytophthora colocasiae causing taro leaf blight: analysis using start codon targeted (SCoT) polymorphism. Journal of Root Crops.

Vishnu S. Nath and Vinayaka M. Hegde and Muthulekshmi L. Jeeva and Raj S. Misra and Syamala S. Veena and Mithun Raj and Suresh K. Unnikrishnan and Sree S. Darveekaran(2014). Rapid and sensitive detection ofPhytophthora colocasiaeresponsible for the taro leaf blight using conventional and real-time PCR assay . FEMS Microbiology Letters. 352. (2). Microsoft.AspNetCore.Mvc.Localization.LocalizedHtmlString 174--183. Oxford University Press ({OUP})