プロフィール詳細

プロジェクトを作成

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Valerii P.に依頼

United States

Skilled bioinformatician (M.S.) with 4 years in DNA/RNA-seq, specializing in cancer genomics, proficient in R/Python.

プロフィール概要

Hi there! I'm a computational biologist who thrives on innovation and cutting-edge research. My journey began at KFU with a Bachelor's in Biochemistry, where my dedication was recognized with a state academic scholarship. At MIPT, I deepened my expertise with a Master's in Bioinformatics and Systems Biology, once again earning a state academic scholarship for research excellence. Key Achievements: · Co-authored pioneering research in Nature Communications on cancer genomics. · Crafted a somatic DNA-seq pipeline for mid-size commercial entities in cancer diagnostics. · Mentored students at MIPT's bioinformatics summer school. · Actively participated in various conferences, presenting both poster and oral sessions. · Engaged in multiple workshops and summer schools, expanding knowledge and networking. Technical Expertise: · Genomic Data Analysis: Extensive experience in DNA-seq and RNA-seq data processing and interpretation. Specialized skills in scRNA-seq analysis, particularly using Seurat. · Data Science & Visualization: Proficient in statistical analysis, data interpretation, and visualization using R tools like ggplot2, tidyverse, bioconductor, shiny, and rmarkdown. Python-based data manipulation and preliminary machine learning using sklearn, numpy, pandas, and seaborn. · Bioinformatics Toolkit: A comprehensive suite of tools including GATK, samtools, IGV, and more for in-depth bioinformatics analyses. · Systems & Development Management: Adept with essential tools like git, docker, and linux-server operations, and experienced in cluster management using slurm. Collaboration & Communication: · Friendly and open-minded person. · Worked well in diverse teams, bringing people together. · Enjoyed helping and mentoring newcomers. · Good at explaining complex ideas in simple terms.

専門分野

• ☆ Molecular Biology
• ☆ Omics
• ☆ Transcriptomics
• ☆ Comparative Genomics
• ☆ Bioinformatics
• ☆ Gene & Protein Expression Analysis
• ☆ Systems Biology
• ☆ Python
• ☆ LaTex
• ☆ R
• ☆ Scikit-learn
• ☆ Markup Languages
• ☆ Colorectal Cancer

サービス

• Writing
• Research
• Consulting
• Data & AI

Writing Technical Writing

Research Technology Scouting, Scientific and Technical Research, Systematic Literature Review, Secondary Data Collection

Consulting Healthcare Consulting, Scientific and Technical Consulting

Data & AI Predictive Modeling, Statistical Analysis, Data Visualization, Big Data Analytics, Data Mining, Data Cleaning, Data Processing, Data Insights

職務経験

Graduate Student

Fox Chase Cancer Center

9月 2022 - 現在

Bioinformatician/Computational Biologist

Moscow Institute of Physics and Technology

3月 2021 - 現在

Research Assistant - Research Associate

Fox Chase Cancer Center

3月 2018 - 9月 2022

Bioinformatics Intern

BostonGene

7月 2021 - 9月 2021

学歴

Bioinformatics and Systems Biology

Moscow Institute of Physics and Technology - Russian Federation

9月 2021 - 7月 2023

Biochemical Engineering and Biotechnology

Kazan State University - Russian Federation

9月 2017 - 7月 2021

認定資格

• 認定資格の詳細は未入力です。

出版物

JOURNAL ARTICLE

Serebriiskii, I.G., Pavlov, V., Tricarico, R., Andrianov, G., Nicolas, E., Parker, M.I., Newberg, J., Frampton, G., Meyer, J.E., Golemis, E.A.(2022). Comprehensive characterization of PTEN mutational profile in a series of 34,129 colorectal cancers . Nature Communications. 13. (1).